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Series GSE214978 Query DataSets for GSE214978
Status Public on Nov 02, 2023
Title Transcriptional dysregulation impairs efficacy of neural stem cell activation during aging [ChIP-seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To get insight into the histone modification in the transcriptional dysregulation of NSC aging, we profiled the principal regulatory histone marks at the promoters and enhancers of age-dependent genes using ChIP-sequencing.
 
Overall design Primary NSCs were isolated from the subventricular zone of the lateral ventricles (SVZ) in the brains of young and aged mice, respectively. The NSCs were maintained in the initial proliferation medium and used in ChIP-sequencing analysis.
 
Contributor(s) Li M, Huang C
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Submission date Oct 06, 2022
Last update date Nov 02, 2023
Contact name Chengyang Peter Huang
E-mail(s) chengyhuang@hotmail.com
Organization name Shantou University Medical College
Street address 22 Xinling Street
City Shantou
ZIP/Postal code 515041
Country China
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (16)
GSM6619526 H3K4me3_Young_Rep1
GSM6619527 H3K4me3_Young_Rep2
GSM6619528 H3K4me3_Aged_Rep1
This SubSeries is part of SuperSeries:
GSE212725 Transcriptional and epigenetic dysregulation impairs generation of proliferative neural stem and progenitor cells during brain aging
Relations
BioProject PRJNA887822

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE214978_Aged_H3K27ac_peaks.bedGraph.gz 528.8 Mb (ftp)(http) BEDGRAPH
GSE214978_Aged_H3K27me3_peaks.bedGraph.gz 580.9 Mb (ftp)(http) BEDGRAPH
GSE214978_Aged_H3K4me3-peaks.bedGraph.gz 388.7 Mb (ftp)(http) BEDGRAPH
GSE214978_Young_H3K27ac_peaks.bedGraph.gz 664.6 Mb (ftp)(http) BEDGRAPH
GSE214978_Young_H3K27me3_peaks.bedGraph.gz 595.7 Mb (ftp)(http) BEDGRAPH
GSE214978_Young_H3K4me3_peaks.bedGraph.gz 605.0 Mb (ftp)(http) BEDGRAPH
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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