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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 11, 2023 |
| Title |
Genome wide screen of H3K27ac enrichment in WT, LKB1 KO, and LKB1/CRTC2 KO mouse embryonic fibroblasts |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
H3K27ac ChIP-seq analysis in WT, LKB1 KO, and LKB1/CRTC2 KO mouse embryonic fibroblasts untreated or stimulated with IL-1β
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| Overall design |
WT, LKB1 KO, and LKB1/CRTC2 KO MEFs were untreated or stimulated with IL-1β for 6 hours and H3K27ac ChIP was performed
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| Contributor(s) |
Compton SE, Jones RG |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Oct 04, 2022 |
| Last update date |
May 13, 2023 |
| Contact name |
Russell Jones |
| E-mail(s) |
russell.jones@vai.org
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| Phone |
6166001610
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| Organization name |
Van Andel Institute
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| Street address |
333 Bostwick Ave. NE
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| City |
Grand Rapids |
| State/province |
MI |
| ZIP/Postal code |
49503 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (12)
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| GSM6616322 |
MEF, WT, IL-1β, H3K27ac |
| GSM6616323 |
MEF, KO, ctrl, Input |
| GSM6616324 |
MEF, KO, ctrl, H3K27ac |
| GSM6616325 |
MEF, KO, IL-1β, Input |
| GSM6616326 |
MEF, KO, IL-1β, H3K27ac |
| GSM6616327 |
MEF, DKO, ctrl, Input |
| GSM6616328 |
MEF, DKO, ctrl, H3K27ac |
| GSM6616329 |
MEF, DKO, IL-1β, Input |
| GSM6616330 |
MEF, DKO, IL-1β, H3K27ac |
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| This SubSeries is part of SuperSeries: |
| GSE214824 |
WT, LKB1 KO, and LKB1/CRTC2 KO mouse embryonic fibroblasts |
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| Relations |
| BioProject |
PRJNA887180 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE214822_RAW.tar |
1.3 Gb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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