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Series GSE212230 Query DataSets for GSE212230
Status Public on Sep 14, 2022
Title Single-cell RNA-seq of brassinosteroid response in Arabidopsis roots
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary We report both raw and processed scRNA-seq data profiling brassinosteroid response and related mutants in Arabidopsis roots
 
Overall design scRNA-seq of 4 wild-type and 20 brassinosteroids-related mutants or treatments. The supplemtary file (BR_time_course.rds.gz) contains WT sample (sc_1) from our previously published work (GSE152766, Sample GSM4625993).
Web link https://www.science.org/doi/10.1126/science.adf4721
 
Contributor(s) Nolan T, Vukašinović N, Hsu C, Zhang J, Vanhoutte I, Shahan R, Taylor IW, Greenstreet L, Heitz M, Wang P, Szekely P, Brosnan A, Belcher H, Afanassiev A, Yin Y, Schiebinger G, Ohler U, Russinova E, Benfey PN
Citation(s) 36996230
Submission date Aug 29, 2022
Last update date Apr 30, 2024
Contact name Philip N. Benfey
Organization name Duke University
Department Biology
Lab Benfey Lab
Street address 130 Science Drive
City Durham
State/province North Carolina
ZIP/Postal code 27708
Country USA
 
Platforms (1)
GPL26208 Illumina NovaSeq 6000 (Arabidopsis thaliana)
Samples (30)
GSM6514329 Arabidopsis root cells - sc_2
GSM6514330 Arabidopsis root cells - sc_5
GSM6514331 Arabidopsis root cells - sc_43
Relations
BioProject PRJNA874688

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE212230_BRZ.rds.gz 12.4 Gb (ftp)(http) RDS
GSE212230_BR_time_course.rds.gz 32.2 Gb (ftp)(http) RDS
GSE212230_COPILOT_summary_files.tar.gz 15.7 Mb (ftp)(http) TAR
GSE212230_RAW.tar 100.2 Gb (http)(custom) TAR (of RDS)
GSE212230_bri1_T.rds.gz 14.1 Gb (ftp)(http) RDS
GSE212230_gtl1_df1.rds.gz 30.1 Gb (ftp)(http) RDS
GSE212230_rc.integrated_6S_CVP2_lines_seu4_annotated_20240429.rds.gz 16.1 Gb (ftp)(http) RDS
GSE212230_rc.integrated_6S_GL2_lines_seu4_annotated_20240429.rds.gz 15.0 Gb (ftp)(http) RDS
GSE212230_sc_132_COPILOT.rds.gz 3.1 Gb (ftp)(http) RDS
GSE212230_sc_136_COPILOT.rds.gz 2.9 Gb (ftp)(http) RDS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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