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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 16, 2022 |
| Title |
Probing cell identity hierarchies by fate titration and collision during direct reprogramming |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://www.embopress.org/doi/full/10.15252/msb.202211129
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| Citation(s) |
36106915 |
| |
| Submission date |
Aug 23, 2022 |
| Last update date |
Sep 18, 2022 |
| Contact name |
Bob Hersbach |
| E-mail(s) |
bob.hersbach@helmholtz-muenchen.de
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| Organization name |
Helmholtz Zentrum Munich
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| Department |
Institute of Stem Cell Research
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| Street address |
Großhaderner Str. 9
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| City |
Planegg-Martinsried |
| ZIP/Postal code |
82152 |
| Country |
Germany |
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| Platforms (3) |
| GPL16417 |
Illumina MiSeq (Mus musculus) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (16)
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| GSM6423060 |
Input, replicate 1 |
| GSM6423061 |
MyoD1, replicate 2 |
| GSM6423062 |
Ascl1_MyoD1, replicate 2 |
| GSM6423063 |
mAscl1_MyoD1, replicate 2 |
| GSM6423064 |
Input, replicate 2 |
| GSM6504514 |
Ascl1-Hnf1a-Myod1-Oct4, 24h biol rep 1 |
| GSM6504515 |
Ascl1-Hnf1a-Myod1-Oct4, 48h biol rep 1 |
| GSM6504516 |
Ascl1-Hnf1a-Myod1-Oct4, 72h biol rep 1 |
| GSM6504517 |
Ascl1-Hnf1a-Myod1-Oct4, 48h biol rep 2 |
| GSM6504518 |
Ascl1-Foxa2-Myod1-Oct4-Sox2 72h tech rep 1 |
| GSM6504519 |
Ascl1-Foxa2-Myod1-Oct4-Sox2 72h tech rep 2 |
| GSM6504520 |
Ascl1-mutAscl1-Myod1, 72h ATAC |
| GSM6504521 |
Ascl1-mutAscl1-Myod1, 72h scRNA-seq |
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| This SuperSeries is composed of the following SubSeries: |
| GSE210181 |
Probing cell identity hierarchies by fate titration and collision during direct reprogramming [Cut & Tag] |
| GSE211862 |
Probing cell identity hierarchies by fate titration and collision during direct reprogramming [scRNA-Seq] |
| GSE211863 |
Probing cell identity hierarchies by fate titration and collision during direct reprogramming [scRNA-seq & scATAC-seq] |
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| Relations |
| BioProject |
PRJNA872397 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE211864_RAW.tar |
2.7 Gb |
(http)(custom) |
TAR (of BED, BIGWIG, BROADPEAK, H5, LOOM, TSV) |
SRA Run Selector |
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