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| Status |
Public on Aug 26, 2022 |
| Title |
Cross-amplified Barcodes on Slides for Spatial Transcriptomics Sequencing |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
Using microfluidics, well-defined barcodes were generated on the slide surface by cross-amplification, followed by high-throughput sequencing using Novaseq to detect spatial transcriptomic information in the mouse brain.
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| Overall design |
Applying new approach – cross-amplified barcodes on slides for spatial transcriptomics sequencing to mouse brain tissues.
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| Contributor(s) |
Jin ZY, Yu NZ, Bai JD, Liu ZY, Liu HR, Zhang JH, Liang CY |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA871370 |
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| Submission date |
Aug 23, 2022 |
| Last update date |
Sep 22, 2022 |
| Contact name |
Zhengyang Jin |
| E-mail(s) |
jinzy21@mails.jlu.edu.cn
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| Organization name |
Jilin University
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| Street address |
No. 1163 Xinmin Street
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| City |
Changchun |
| State/province |
Jilin |
| ZIP/Postal code |
130021 |
| Country |
China |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (1) |
| GSM6504379 |
RNA-Seq of mus musculus:adult male brain (CBSST-Seq) |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSE211858_RAW.tar |
30.3 Mb |
(http)(custom) |
TAR (of MTX, TAR, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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