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Series GSE211250 Query DataSets for GSE211250
Status Public on Jul 28, 2023
Title Mitochondrial DNA sequences of familial (maternal vs. non-maternal) ALS cases in whole blood, platelets and white blood cells
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary To address the question of whether mtDNA mutations might play a role in familiar ALS (fALS), mtDNA was isolated from whole blood (WB), white blood cells (WBC) and platelets (PLT) from fALS patients and the mitochondrial genome was analyzed using a mtDNA resequencing array (Affymetrix MitoChip v2.0) that allows detection of low-level heteroplasmy in addition to the conventional homoplasmic or heteroplasmic mutations. We distinguished between fALS cases with a prominent maternal (mat) inheritance pattern and fALS cases that do not point to a maternal inheritance pattern (non-mat). As additional controls we compared our results to healthy age and sex matched individuals without any known neurodegenerative background. With this we are aiming to get a deeper insight into a possible role of mtDNA alterations acting as a disease modifier in a subgroup of ALS patients presenting with a maternal transmission of the disease.
 
Overall design 184 MitoChips were performed in total. For each analysed group a n-number was included as follows (CTRL/ALS non-mat/ALS mant): whole blood (49/23/25), white blood cells (22/6/16), platelets (21/6/16). For the isolated cell types (PLT and WBC) freshly drawn EDTA blood was used to isolate the cell populations by differential centrifugation and cleaning up of the sample by magnetic bead separation. For whole blood samples one aliquot of frozen EDTA blood from the biobank was used.
 
Contributor(s) Brockmann SJ, Buck E, Tiziana C, de Meirelles JL, Ruf WP, Fabietti P, Holzmann K, Weishaupt JH, Ludolph AC, Conti F, Danzer KM
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Submission date Aug 15, 2022
Last update date Jul 28, 2023
Contact name Karin Danzer
E-mail(s) karin.danzer@uni-ulm.de
Organization name DZNE
Street address Albert-Einstein-Allee 11
City Ulm
ZIP/Postal code 89069
Country Germany
 
Platforms (1)
GPL10983 [Mitochip_2] Affymetrix Human Mitochondrial Resequencing Array 2.0
Samples (184)
GSM6459776 platelets-ALS-nonmat-1 [01_PLT]
GSM6459777 wholeblood-ALS-nontmat-1 [01_WB]
GSM6459778 platelets-ALS-mat-2 [02_PLT]
Relations
BioProject PRJNA869683

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211250_RAW.tar 400.7 Mb (http)(custom) TAR (of CEL, CHP)
GSE211250_ReadMe.txt 280 b (ftp)(http) TXT
GSE211250_SNPTableData.txt.gz 99.0 Kb (ftp)(http) TXT
GSE211250_SNP_report_Part_1.txt.gz 80.5 Kb (ftp)(http) TXT
GSE211250_SNP_report_Part_2.txt.gz 64.3 Kb (ftp)(http) TXT
Processed data provided as supplementary file
Processed data are available on Series record

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