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Series GSE211130 Query DataSets for GSE211130
Status Public on Oct 07, 2022
Title Identification of Cytoprotective Small Molecule Inducers of Heme Oxygenase-1
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Acute kidney injury (AKI) is a major public health concern with significant attributable morbidity and mortality with no current FDA approved treatments other than supportive care through dialysis. Several pre-clinical studies have suggested that heme-oxygenase-1 (HO-1), an enzyme that catalyzes the breakdown of heme, has promise as a potential therapeutic target for AKI. Clinical trials involving HO-1 products (biliverdin, carbon monoxide, and iron), however, have not progressed beyond the Phase 1/2 level. We have identified small molecule inducers of HO-1 that enable us to exploit the full therapeutic potential of HO-1, the combination of its products, and as-yet-undefined effects of the enzyme system. Through cell-based, high throughput screens for induction of HO-1 through the human HO-1 promoter/enhancer, we identified two novel small molecules and broxaldine, an FDA approved antiprotozoal, for further consideration as candidate compounds exhibiting Emax ≥ 70% of 5 µM hemin and EC50<10 µM. RNA sequencing identified shared binding motifs to NRF-2, a transcription factor known to regulate antioxidant genes, including HO-1. siRNA knockdown of NRF-2 confirmed the role of NRF-2 in induction of HO-1. In vitro, cytoprotective function of the candidates was assessed against cisplatin-induced cytotoxicity and apoptosis. In vivo, delivery of candidate compounds induced HO-1 expression in the kidneys of mice. This study serves as the basis for further development of small molecule HO-1 inducers as preventative or therapeutic interventions for a variety of pathologies, including AKI.
 
Overall design Bulk RNA sequencing of HEK293 cells treated with small molecules SRI-37618, SRI-40109, broxaldine, hemin, or DMSO (vehicle) for 4 or 8 hours. N=2 per timepoint and condition.
 
Contributor(s) Ghajar-Rahimi G, Traylor AM, Mathew B, Bostwick JR, Nebane-Ngwa NM, Zmijewska A, Esman S, Zhai L, Sambandam V, Cowell RM, Suto MJ, George JF, Augelli-Szafran CE, Agarwal A
Citation(s) 36290611
Submission date Aug 12, 2022
Last update date Nov 02, 2022
Contact name Anupam Agarwal
E-mail(s) agarwal@uab.edu
Organization name University of Alabama at Birmingham
Street address 703 19th St S
City Birmingham
State/province AL
ZIP/Postal code 35294
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (22)
GSM6451062 No_treatment1
GSM6451063 No_treatment2
GSM6451064 Veh_4h_1
Relations
BioProject PRJNA869065

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211130_RAW.tar 5.0 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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