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GEO accession:
Series GSE210317
Query DataSets for GSE210317
Status
Public on Dec 01, 2022
Title
Active DNA demethylation promotes cell fate specification and the DNA damage response
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36454826
Submission date
Aug 02, 2022
Last update date
Dec 04, 2022
Contact name
Wei Wu
Organization name
Center for Excellence in Molecular Cell Science
Department
Center for Excellence in Molecular Cell Science
Street address
320 yueyang road
City
Shanghai
State/province
Shanghai
ZIP/Postal code
200031
Country
China
Platforms (4)
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GPL15520
Illumina MiSeq (Homo sapiens)
GPL16417
Illumina MiSeq (Mus musculus)
GPL21626
NextSeq 550 (Mus musculus)
GPL21697
NextSeq 550 (Homo sapiens)
Samples (121)
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GSM6428015
iNeuron_d7_Gemcitabine_SAR-seq_rep1
GSM6428016
iNeuron_d7_Gemcitabine_SAR-seq_rep2
GSM6428017
iNeuron_d7_AraC_SAR-seq_rep1
GSM6428018
iNeuron_d7_AraC_SAR-seq_rep2
GSM6428019
iNeuron_d7_NTforAraC_gemcitabine_SAR-seq_rep1
GSM6428020
iNeuron_d7_NTforAraC_gemcitabine_SAR-seq_rep2
GSM6428021
iNeuron_AraA_SAR-seq
GSM6428022
iNeuron_AraC_SAR-seq
GSM6428023
iNeuron_NTforAraC_AraA_SAR-seq
GSM6428024
iNeuron_NTfor_ddA_ddC_SAR-seq
GSM6428025
iNeuron_ddA_SAR-seq
GSM6428026
iNeuron_ddC_SAR-seq
GSM6428027
iMacrophage_WT_PARPi_SAR-seq
GSM6428028
iMacrophage_TDGKO_PARPi_SAR-seq
GSM6428029
iMacrophage_PARPi_SAR-seq
GSM6428030
iMacrophage_ddC_SAR-seq
GSM6428031
iMacrophage_NT_SAR-seq
GSM6428032
iNeuron_sgTDG_PBseq_rep1
GSM6428033
iNeuron_sgTDG_PBseq_rep2
GSM6428034
iNeuron_sgTDG_PBseq_rep3
GSM6428035
iNeuron_WT_controlfor_sgTDG_PBseq_rep1
GSM6428036
iNeuron_WT_controlfor_sgTDG_PBseq_rep2
GSM6428037
iNeuron_WT_controlfor_sgTDG_PBseq_rep3
GSM6428038
iNeuron_TDGdegron_NT_Pbseq_rep1
GSM6428039
iNeuron_TDGdegron_NT_Pbseq_rep2
GSM6428040
iNeuron_TDGdegron_NT_Pbseq_rep3
GSM6428041
iNeuron_TDGdegron_dTAG_PBseq_rep1
GSM6428042
iNeuron_TDGdegron_dTAG_PBseq_rep2
GSM6428043
iNeuron_TDGdegron_dTAG_PBseq_rep3
GSM6428044
iMacrophage_WT_PBseq_site3_rep1
GSM6428045
iMacrophage_WT_PBseq_site3_rep2
GSM6428046
iMacrophage_WT_PBseq_site3_rep3
GSM6428047
iMacrophage_TDGKO_PBseq_site3_rep1
GSM6428048
iMacrophage_TDGKO_PBseq_site3_rep2
GSM6428049
iMacrophage_TDGKO_PBseq_site3_rep3
GSM6428050
iMacrophage_WT_PBseq_site1_site2_rep1
GSM6428051
iMacrophage_WT_PBseq_site1_site2_rep2
GSM6428052
iMacrophage_WT_PBseq_site1_site2_rep3
GSM6428053
Macrophage_TDGKO_PBseq_site1_site2_rep1
GSM6428054
Macrophage_TDGKO_PBseq_site1_site2_rep2
GSM6428055
Macrophage_TDGKO_PBseq_site1_site2_rep3
GSM6428056
iNeuron_TDGdegron_dTAG_ddC_S1ENDseq
GSM6428057
iNeuron_TDGdegron_NT_ddC_S1ENDseq
GSM6428058
iNeuron_WT_controlfor_sgTDG_ddC_S1ENDseq
GSM6428059
iNeuron_sgTDG_ddC_S1ENDseq
GSM6428060
iNeuron_TDGdegron_dTAG_ddC_S1ENDseq_rep2
GSM6428061
iNeuron_TDGdegron_NT_ddC_S1ENDseq_rep2
GSM6428062
iNeuron_WT_controlfor_sgTDG_ddC_S1ENDseq_rep2
GSM6428063
iNeuron_sgTDG_ddC_S1ENDseq_rep2
GSM6428064
iNeuron_ENDseq
GSM6428065
iNeuron_S1ENDseq
GSM6428066
iNeuron_ddC_ENDseq
GSM6428067
iNeuron_ddC_S1ENDseq
GSM6428068
iNeuron_AraC_S1ENDseq
GSM6428069
iNeuron_AraA_S1ENDseq
GSM6428070
iNeuron_ddC_pairedwithAraA_S1ENDseq
GSM6428071
iNeuron_NT_pairedwithAraA_S1ENDseq
GSM6428072
iMacrophage_ddC_S1ENDseq
GSM6428073
Macrophage_WT_ddC_S1ENDseq
GSM6428074
iMacrophage_TDGKO_ddC_S1ENDseq
GSM6428075
iMacrophage_ddA_S1ENDseq
GSM6428076
iMacrophage_ddC_PairedwithOthers_S1ENDseq
GSM6428077
iMacrophage_ddG_S1ENDseq
GSM6428078
iMacrophage_ddT_S1ENDseq
GSM6428081
iNeuron_ddA_S1ENDseq
GSM6428082
iNeuron_ddT_S1ENDseq
GSM6428083
iNeuron_ddC_paired_withddATG_S1ENDseq
GSM6428084
iNeuron_ddG_S1ENDseq
GSM6428085
iNeuron_POLBKD_ddC_S1ENDseq
GSM6428086
iMacrophage_5hmC_SEAL
GSM6428087
iNeuron_NT_RNA-seq
GSM6428088
iNeuron_ddC_RNA-seq
GSM6428089
iNeuron_AraC_RNA-seq
GSM6428090
iNeuron_AraA_RNA-seq
GSM6428091
iMacrophage_WT_0h_RNA-seq_rep1
GSM6428092
iMacrophage_TDGKO_0h_RNA-seq_rep1
GSM6428093
iMacrophage_WT_24h_RNA-seq_rep1
GSM6428094
iMacrophage_TDGKO_24h_RNA-seq_rep1
GSM6428095
iMacrophage_WT_48h_RNA-seq_rep1
GSM6428096
iMacrophage_TDGKO_48h_RNA-seq_rep1
GSM6428097
iMacrophage_WT_72h_RNA-seq_rep1
GSM6428098
iMacrophage_TDGKO_72h_RNA-seq_rep1
GSM6428099
iMacrophage_WT_0h_RNA-seq_rep2
GSM6428100
iMacrophage_TDGKO_0h_RNA-seq_rep2
GSM6428101
iMacrophage_WT_24h_RNA-seq_rep2
GSM6428102
iMacrophage_TDGKO_24h_RNA-seq_rep2
GSM6428103
iMacrophage_WT_48h_RNA-seq_rep2
GSM6428104
iMacrophage_TDGKO_48h_RNA-seq_rep2
GSM6428105
iMacrophage_WT_72h_RNA-seq_rep2
GSM6428106
iMacrophage_TDGKO_72h_RNA-seq_rep2
GSM6685233
iMacrophage_oxENDseq
GSM6685235
iPSC_WT_day7_RNAseq_rep1
GSM6685236
iPSC_WT_day7_RNAseq_rep2
GSM6685237
iPSC_WT_day7_RNAseq_rep3
GSM6685238
iPSC_TDGKD_day7_RNAseq_rep1
GSM6685239
iPSC_TDGKD_day7_RNAseq_rep2
GSM6685240
iPSC_TDGKD_day7_RNAseq_rep3
GSM6685241
iNeuron_WT_day7_RNAseq_rep1
GSM6685242
iNeuron_WT_day7_RNAseq_rep2
GSM6685243
iNeuron_WT_day7_RNAseq_rep3
GSM6685244
iNeuron_TDGKD_day7_RNAseq_rep1
GSM6685245
iNeuron_TDGKD_day7_RNAseq_rep2
GSM6685246
iNeuron_TDGKD_day7_RNAseq_rep3
GSM6685247
iNeuron_WT_day17_RNAseq_rep1
GSM6685248
iNeuron_WT_day17_RNAseq_rep2
GSM6685249
iNeuron_WT_day17_RNAseq_rep3
GSM6685250
iNeuron_WT_day17_RNAseq_rep4
GSM6685251
iNeuron_WT_day17_RNAseq_rep5
GSM6685252
iNeuron_WT_day17_RNAseq_rep6
GSM6685253
iNeuron_TDGKD_day17_RNAseq_rep1
GSM6685254
iNeuron_TDGKD_day17_RNAseq_rep2
GSM6685255
iNeuron_TDGKD_day17_RNAseq_rep3
GSM6685256
iNeuron_TDGKD_day17_RNAseq_rep4
GSM6685257
iNeuron_TDGKD_day17_RNAseq_rep5
GSM6685258
iNeuron_TDGKD_day17_RNAseq_rep6
GSM6685259
iNeuron_WT_day30_RNAseq_rep1
GSM6685260
iNeuron_WT_day30_RNAseq_rep2
GSM6685261
iNeuron_WT_day30_RNAseq_rep3
GSM6685262
iNeuron_TDGKD_day30_RNAseq_rep1
GSM6685263
iNeuron_TDGKD_day30_RNAseq_rep2
GSM6685264
iNeuron_TDGKD_day30_RNAseq_rep3
This SuperSeries is composed of the following SubSeries:
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GSE210312
Active DNA demethylation promotes cell fate specification and the DNA damage response [SAR-Seq]
GSE210313
Active DNA demethylation promotes cell fate specification and the DNA damage response [PB-Seq]
GSE210314
Active DNA demethylation promotes cell fate specification and the DNA damage response [END-Seq]
GSE210315
Active DNA demethylation promotes cell fate specification and the DNA damage response [SEAL]
GSE210316
Active DNA demethylation promotes cell fate specification and the DNA damage response [RNA-Seq]
Relations
BioProject
PRJNA865256
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE210317_RAW.tar
4.8 Gb
(http)
(custom)
TAR (of BW, TXT)
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