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Series GSE209816 Query DataSets for GSE209816
Status Public on Jun 08, 2023
Title Characterization of a strain-specific Cd1 reference genome reveals potential inter- and intra-strain functional variability
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Genome variation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
Web link https://doi.org/10.1101/2022.12.05.519186
 
Citation(s) 37537522
Submission date Jul 26, 2022
Last update date Aug 09, 2023
Contact name Isaac Jacob Kremsky
E-mail(s) ikremsky@llu.edu
Phone 4044368914
Organization name Loma Linda University
Department Basic Sciences
Street address 11175 Campus St., Chan Shun Pavilion, Room A1022
City Loma Linda
State/province CA
ZIP/Postal code 92350
Country USA
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (9)
GSM6398623 Cont, Adipose, ATACseq, Rep1
GSM6398624 Cont, Adipose, ATACseq, Rep2
GSM6398625 BPAF3, Adipose, ATACseq, Rep1
This SuperSeries is composed of the following SubSeries:
GSE209810 Characterization of a strain-specific Cd1 reference genome reveals potential inter- and intra-strain functional variability [ATAC-seq]
GSE209815 Characterization of a strain-specific Cd1 reference genome reveals potential inter- and intra-strain functional variability [gDNA]
Relations
BioProject PRJNA862518

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE209816_RAW.tar 8.9 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp

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