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Series GSE206980 Query DataSets for GSE206980
Status Public on Jun 30, 2022
Title Crustacean leg regeneration restores cell diversity
Organism Parhyale hawaiensis
Experiment type Expression profiling by high throughput sequencing
Summary Animals can regenerate complex organs, yet this frequently results in imprecise replicas of the original structure. In the crustacean Parhyale, we examine the fidelity of leg regeneration using cellular composition and cell molecular profiles. Single-nuclei sequencing shows that regenerated and uninjured legs are indistinguishable in terms of cell type composition and transcriptional profiles.
 
Overall design Legs of the Crustacean Parhyale hawaiensis were amputated and analyzed through scRNAseq after regeneration.
 
Contributor(s) Alba A, Cagri C, Jacob M, Michalis A, Mathilde P
Citation(s) 36001670
Submission date Jun 27, 2022
Last update date Sep 14, 2022
Contact name Mathilde PARIS
E-mail(s) mathilde.paris@ens-lyon.fr
Organization name CNRS
Lab IGFL
Street address 32-34 Av. Tony Garnier
City Lyon
ZIP/Postal code 69007
Country France
 
Platforms (1)
GPL31929 Illumina NextSeq 500 (Parhyale hawaiensis)
Samples (5)
GSM6267524 Leg, 0month, uninjured
GSM6267525 Leg, 6months, uninjured
GSM6267526 Leg, 6months, regenerated
Relations
BioProject PRJNA853193

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE206980_Phaw_exon_annotation.gtf.gz 2.9 Mb (ftp)(http) GTF
GSE206980_Phaw_intron_annotation.gtf.gz 2.2 Mb (ftp)(http) GTF
GSE206980_RAW.tar 128.5 Mb (http)(custom) TAR (of MTX, TSV, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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