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Series GSE206863 Query DataSets for GSE206863
Status Public on Jan 17, 2023
Title Synthetic regulatory genomics uncovers enhancer context dependence at the Sox2 locus
Organism Mus musculus
Experiment type Other
Genome binding/occupancy profiling by high throughput sequencing
Summary Sequencing and coverage data produced as part of the Big-IN genome engineering sequence verification pipeline.
 
Overall design (1) whole YAC/BAC (payload) sequencing data. (2) Targeted sequencing (Capture-seq) data from mouse embryonic stem cell (mESC) lines engineered to harbor landing pads (LPs) and various payloads at Sox2 locus.
 
Contributor(s) Maurano MM, Brosh R, Coelho C, Ribeiro-dos-Santos AM, Hogan MS, Ashe HJ, Ellis G, Somogyi N, Ordoñez R, Luther R, Huang E, Boeke JD
Citation(s) 36931273
Submission date Jun 24, 2022
Last update date Apr 20, 2023
Contact name Matthew T Maurano
Organization name NYU Grossman School of Medicine
Department Institute for Systems Genetics
Lab Maurano lab
Street address 435 East 30th Street
City New York
State/province New York
ZIP/Postal code 10016
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (434)
GSM6265817 BAC-Sox2_Sox2_46kbp~dDistalLCR-BS02957A
GSM6265818 BAC-Sox2_Sox2_101kb~dDistalLCR-BS02959A
GSM6265819 BAC-Sox2_Sox2_126kb~dProximalLCR-BS02961A
Relations
BioProject PRJNA852558

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE206863_RAW.tar 16.6 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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