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Series GSE206561 Query DataSets for GSE206561
Status Public on Feb 13, 2024
Title A ketogenic diet can revert acquired resistance to immunotherapy in prostate cancer through β-hydroxybutyrate-mediated inhibition of histone deacetylases
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary Prostate cancer is the second leading cause of cancer deaths in men in the US. In the past decade, immune checkpoint blockade (ICB) drugs targeting programmed death 1 (PD-1) and cytotoxic T-lymphocyte antigen 4 (CTLA-4) have revolutionized the field of cancer therapeutics, but the objective response rate in prostate cancers is in the low single digits. A major complicating issue is that immunotherapies can have significant adverse effects, so there is a clinical need for novel combinatorial strategies that do not involve additional or compounding adverse effects. We developed a model system of advanced prostate cancer that has acquired resistance to ICB therapy. The PD-1 resistant sublines showed strong downregulation of the mouse major histocompatibility complex (MHC-I), which was reversed by treating cells with either the pan-histone deacetylase (HDAC) inhibitor Vorinostat or β-hydroxybutyrate. When mice bearing these ICB resistant tumor are treated with either Vorinostat, with a cyclical ketogenic diet (CKD), or with a 1,3-butanediol diet (BD), tumors are resensitized to ICB therapy. We analyzed changes in the tumor immune microenvironment and showed that this effect is driven by a shift in monocyte differentiation, changing from M2 polarized immunosuppressive macrophages into iNOS+ dendritic cells instead. This differentiation is dependent on an ICB-induced increase in CD40L+ CD8+ T-cells in the tumor immune microenvironment. Our results indicate a novel mechanism in which a ketogenic diet can be used to increase therapeutic efficacy of ICB therapy.
 
Overall design Samples consist of single cell suspensions, derived from 3 different tumors per treatment group (standard diet (SD), butanediol diet (BD), immune checkpoint blockade (ICB), and BD + ICB.
 
Contributor(s) Murphy S, Rahmy S, Gan D, Lu X
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Submission date Jun 21, 2022
Last update date Feb 14, 2024
Contact name Xin Lu
E-mail(s) xlu@nd.edu
Phone 574-631-6592
Organization name University of Notre Dame
Department Biological Sciences
Lab Lu lab
Street address 109 Galvin Life Science Center
City Notre Dame
State/province IN
ZIP/Postal code 46556
Country USA
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (6)
GSM6256891 SD and BD library
GSM6256892 ICB and BD & ICB library
GSM6256893 SD and BD HTO library lane 1
Relations
BioProject PRJNA851379

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE206561_Library_hashtag_information.txt.gz 1007 b (ftp)(http) TXT
GSE206561_RAW.tar 403.7 Mb (http)(custom) TAR (of MTX, TSV)
GSE206561_expression_counts.csv.gz 15.5 Mb (ftp)(http) CSV
GSE206561_meta_data.csv.gz 147.7 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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