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Status |
Public on Mar 06, 2010 |
Title |
Genome-wide mapping of OCT4, NANOG and CTCF in human embryonic stem cells |
Organism |
Homo sapiens |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
Transcription factors and their specific interactions with targets are crucial in specifying gene expression programs. To gain insights into the transcriptional regulatory networks in embryonic stem cells, we used chromatin immunoprecipitation coupled to ultra-high-throughput DNA sequencing (ChIP-seq) to map the locations of OCT4, NANOG and CTCF.
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Overall design |
ChIP-enriched DNA from pooled ChIP samples were analyzed by Solexa sequencing.
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Contributor(s) |
Bourque G, Ng H |
Citation(s) |
20526341 |
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Submission date |
Mar 05, 2010 |
Last update date |
May 15, 2019 |
Contact name |
Justin Jeyakani Joseph Gnanakkan |
E-mail(s) |
gnanakkan@gis.a-star.edu.sg
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Phone |
68088173
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Organization name |
Genome Institute of Singapore
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Department |
Computational and Systems Biology
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Street address |
60, Biopolis street
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City |
Singapore |
State/province |
Singapore |
ZIP/Postal code |
138672 |
Country |
Singapore |
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Platforms (1) |
GPL9052 |
Illumina Genome Analyzer (Homo sapiens) |
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Samples (5)
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This SubSeries is part of SuperSeries: |
GSE21200 |
OCT4, NANOG and CTCF in human embryonic stem cells |
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Relations |
SRA |
SRP002053 |
BioProject |
PRJNA129611 |