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Series GSE20650 Query DataSets for GSE20650
Status Public on Mar 06, 2010
Title Genome-wide mapping of OCT4, NANOG and CTCF in human embryonic stem cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Transcription factors and their specific interactions with targets are crucial in specifying gene expression programs. To gain insights into the transcriptional regulatory networks in embryonic stem cells, we used chromatin immunoprecipitation coupled to ultra-high-throughput DNA sequencing (ChIP-seq) to map the locations of OCT4, NANOG and CTCF.
Overall design ChIP-enriched DNA from pooled ChIP samples were analyzed by Solexa sequencing.
Contributor(s) Bourque G, Ng H
Citation(s) 20526341
Submission date Mar 05, 2010
Last update date May 15, 2019
Contact name Justin Jeyakani Joseph Gnanakkan
Phone 68088173
Organization name Genome Institute of Singapore
Department Computational and Systems Biology
Street address 60, Biopolis street
City Singapore
State/province Singapore
ZIP/Postal code 138672
Country Singapore
Platforms (1)
GPL9052 Illumina Genome Analyzer (Homo sapiens)
Samples (5)
GSM518373 OCT4
GSM518375 CTCF
This SubSeries is part of SuperSeries:
GSE21200 OCT4, NANOG and CTCF in human embryonic stem cells
SRA SRP002053
BioProject PRJNA129611

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE20650_RAW.tar 154.6 Mb (http)(custom) TAR (of BED, TXT)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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