|
| Status |
Public on Jan 29, 2023 |
| Title |
Spatial epigenome-transcriptome co-profiling of mammalian tissues |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
36922587 |
| |
| Submission date |
May 29, 2022 |
| Last update date |
Apr 14, 2023 |
| Contact name |
Di Zhang |
| E-mail(s) |
di.zhang@yale.edu
|
| Organization name |
Yale University
|
| Department |
Biomedical Engineering
|
| Street address |
55 Prospect St
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06511 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (22)
|
| GSM6204635 |
MouseBrain 20um H3K27ac |
| GSM6204636 |
MouseBrain 20um |
| GSM6204637 |
ME13 100barcodes 25um |
| GSM6206884 |
ATAC-Seq HumanBrain_50um |
| GSM6206885 |
RNA-Seq HumanBrain_50um |
| GSM6704977 |
MouseBrain, 20um, H3K27ac, rep |
| GSM6704978 |
MouseBrain, 20um, 100barcodes, H3K27me3 |
| GSM6704979 |
MouseBrain, 20um, 100barcodes, H3K27ac |
| GSM6704980 |
MouseBrain, 20um, 100barcodes, H3K4me3 |
| GSM6753041 |
MouseBrain_20um_repATAC |
| GSM6753042 |
MouseBrain_20um_H3K27ac rep |
| GSM6753043 |
MouseBrain_20um_100barcodes_ATAC |
| GSM6753044 |
MouseBrain_20um_100barcodes_H3K27me3 |
| GSM6753045 |
MouseBrain_20um_100barcodes_H3K27ac |
| GSM6753046 |
MouseBrain_20um_100barcodes_H3K4me3 |
| GSM6758284 |
MouseBrain_20um_rep2 ATAC |
| GSM6758285 |
MouseBrain_20um_100barcodes_rep2 ATAC |
| GSM6799937 |
ME13_50um |
| GSM6801813 |
ME13_50um [ATAC-Seq] |
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE205051 |
Spatial epigenome-transcriptome co-profiling of mammalian tissues [CUT&TAG] |
| GSE205052 |
Spatial epigenome-transcriptome co-profiling of mammalian tissues [ATAC-Seq] |
| GSE205054 |
Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq] |
| GSE205180 |
Spatial epigenome-transcriptome co-profiling of mammalian tissues [Human ATAC-Seq] |
| GSE205181 |
Spatial epigenome-transcriptome co-profiling of mammalian tissues [Human RNA-Seq] |
| GSE217091 |
Spatial epigenome-transcriptome co-profiling of mammalian tissues [spatial CUT&Tag] |
| GSE218593 |
Spatial epigenome-transcriptome co-profiling of mammalian tissues |
|
| Relations |
| BioProject |
PRJNA843455 |
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