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Series GSE20303 Query DataSets for GSE20303
Status Public on Sep 17, 2010
Title ChIP-Seq sequencing of novel interactors of H3K4me3, H3K36me3 and H3K9me3
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This study describes the epigenetic profiling of the novel interactors of H3K4me3, H3K36me3 or H3K9me3. The interactors were ChIP-Seq profiled by their GFP tag in stably transfected HeLa (Kyoto) cells. The interactors include GATAD1, Sgf29, BAP18, TRRAP, PHF8, N-PAC and LRWD1 (including replicates), as well as an GFP ChIP-Seq profile on non-transfected HeLa cells (negative control). Also included are the profiles of the histone modifications themselves (H3K4me3, H3K27me3, H3K9me3, H3K36me3, H3K9/14Ac and H3K79me3)
 
Overall design ChIP-Seq profiling of 8 proteins by their GFP tag in stably transfected cells HeLa (Kyoto) cells, 6 replicas, as well as ChIP-Seq profiling of 6 histone modifications in wt HeLa (Kyoto) cells
 
Contributor(s) Marks H, Vermeulen M, Eberl HC, Matarese F, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M
Citation(s) 20850016
Submission date Feb 12, 2010
Last update date May 15, 2019
Contact name Hendrik Marks
E-mail h.marks@ncmls.ru.nl
Organization name Radboud University Nijmegen, RIMLS
Department Molecular Biology
Street address Geert Grooteplein 26/28
City Nijmegen
ZIP/Postal code 6525GA
Country Netherlands
 
Platforms (1)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Samples (20)
GSM566155 GATAD1-GFP_HeLa rep1
GSM566156 Sgf29-GFP_HeLa rep1
GSM566157 BAP18-GFP_HeLa rep1
Relations
SRA SRP002252
BioProject PRJNA125341

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE20303_RAW.tar 1.8 Gb (http)(custom) TAR (of BED, WIG)
Processed data provided as supplementary file
Processed data is available on Series record
Raw data are available in SRA

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