|
| Status |
Public on May 14, 2022 |
| Title |
ATAC-seq Optimization for Cancer Cells |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ATAC-seq has been used for mapping open chromatin regions. Here we summarize our optimization methods.
|
| |
|
| Overall design |
ATAC seq experiment is optimized using different cancer cell lines. Moreover, it is optimized using different cell numbers of mouse mammary gland epithelial cell line NMuMG
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| |
|
| Contributor(s) |
Ray A, Cooper M, Dhasarathy A, Takaku M |
| Citation(s) |
35848835 |
| |
| Submission date |
May 11, 2022 |
| Last update date |
Aug 22, 2022 |
| Contact name |
Archana Dhasarathy |
| E-mail(s) |
archana.dhasarathy@und.edu
|
| Phone |
7017774285
|
| Organization name |
UNIVERSITY OF NORTH DAKOTA
|
| Department |
Biomedical Sciences
|
| Lab |
Dhasarathy Lab
|
| Street address |
1301 N. Columbia Road, STOP 9061, STOP 9037
|
| City |
Grand Forks |
| State/province |
ND |
| ZIP/Postal code |
58202-9037 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL16417 |
Illumina MiSeq (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA837267 |
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