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| Status |
Public on Apr 09, 2010 |
| Title |
Accumulation of TuMV-derived siRNAs in aerial parts of Arabidopsis thaliana plants at 7 and 10 dpi |
| Organisms |
Arabidopsis thaliana; Turnip mosaic virus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
At 7 and 10 dpi with wild type TuMV or buffer (mock) whole plants (root not included) were collected and total RNA extracted for sRNA sequencing using the Illumina plataform.
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| |
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| Overall design |
Three plant genotypes were analyzed: Col-0, dcl1-7 single mutant and dcl2-1 dcl3-1 dcl4-2 triple mutants. Three replicate libraries were made per treatment. For each library, hits to TuMV and to Arabidopsis are inclued in separate files.
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| |
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| Contributor(s) |
Garcia-Ruiz H, Carrington JC |
| Citation(s) |
20190077 |
| |
| Submission date |
Feb 04, 2010 |
| Last update date |
Jun 11, 2013 |
| Contact name |
James C Carrington |
| E-mail(s) |
jcarrington@danforthcenter.org
|
| Phone |
314-587-1202
|
| Organization name |
Donald Danforth Plant Science Center
|
| Lab |
James C. Carrington
|
| Street address |
975 North Warson Road
|
| City |
Saint Louis |
| State/province |
MO |
| ZIP/Postal code |
63132 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL10065 |
Illumina Genome Analyzer (Arabidopsis thaliana; Turnip mosaic virus) |
|
| Samples (36)
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| Relations |
| BioProject |
PRJNA125701 |
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