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Series GSE20197 Query DataSets for GSE20197
Status Public on Apr 09, 2010
Title Accumulation of TuMV-derived siRNAs in aerial parts of Arabidopsis thaliana plants at 7 and 10 dpi
Organisms Arabidopsis thaliana; Turnip mosaic virus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary At 7 and 10 dpi with wild type TuMV or buffer (mock) whole plants (root not included) were collected and total RNA extracted for sRNA sequencing using the Illumina plataform.
 
Overall design Three plant genotypes were analyzed: Col-0, dcl1-7 single mutant and dcl2-1 dcl3-1 dcl4-2 triple mutants. Three replicate libraries were made per treatment. For each library, hits to TuMV and to Arabidopsis are inclued in separate files.
 
Contributor(s) Garcia-Ruiz H, Carrington JC
Citation(s) 20190077
Submission date Feb 04, 2010
Last update date Jun 11, 2013
Contact name James C Carrington
E-mail jcarrington@danforthcenter.org
Phone 314-587-1202
Organization name Donald Danforth Plant Science Center
Lab James C. Carrington
Street address 975 North Warson Road
City Saint Louis
State/province MO
ZIP/Postal code 63132
Country USA
 
Platforms (1)
GPL10065 Illumina Genome Analyzer (Arabidopsis thaliana; Turnip mosaic virus)
Samples (36)
GSM506656 FC102_L006_M1_AAC
GSM506657 FC102_L006_M1_TTC
GSM506658 FC102_L006_M1_GGC
Relations
BioProject PRJNA125701

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE20197_RAW.tar 71.3 Mb (http)(custom) TAR (of TXT)
Processed data provided as supplementary file

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