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| Status |
Public on Apr 30, 2022 |
| Title |
Dissecting genetic components associated with eye disease using integrative genomic analysis |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Apr 27, 2022 |
| Last update date |
May 02, 2022 |
| Contact name |
Kirsty Jamieson |
| E-mail(s) |
kirstyjamieson@gmail.com
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| Organization name |
University of California
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| Street address |
400 Parnassus Ave
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| City |
San Francisco |
| ZIP/Postal code |
94143 |
| Country |
USA |
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| Platforms (2) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (24)
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| GSM6069383 |
ATAC-seq, iPSC-induced RPE, biol rep2 |
| GSM6069384 |
ATAC-seq, iPSC-induced RPE, biol rep3 |
| GSM6069385 |
ATAC-seq, primary RPE, biol rep1 |
| GSM6069386 |
ATAC-seq, primary RPE, biol rep2 |
| GSM6069387 |
ATAC-seq, primary RPE, biol rep3 |
| GSM6069388 |
Capture HiC, iPSC-induced RPE, biol rep1 |
| GSM6069389 |
Capture HiC, iPSC-induced RPE, biol rep2 |
| GSM6069390 |
Capture HiC, primary RPE, biol rep1 |
| GSM6069391 |
Capture HiC, primary RPE, biol rep2 |
| GSM6069392 |
ChIP-seq, input, iPSC-induced RPE, biol rep1 |
| GSM6069393 |
ChIP-seq, H3K27ac, iPSC-induced RPE, biol rep1 |
| GSM6069394 |
ChIP-seq, input, iPSC-induced RPE, biol rep2 |
| GSM6069395 |
ChIP-seq, H3K27ac, iPSC-induced RPE, biol rep2 |
| GSM6069396 |
RNA-seq, iPSCs, biol rep1 |
| GSM6069397 |
RNA-seq, iPSCs, biol rep2 |
| GSM6069398 |
RNA-seq, iPSC-induced RPE, biol rep1 |
| GSM6069399 |
RNA-seq, iPSC-induced RPE, biol rep2 |
| GSM6069400 |
RNA-seq, iPSC-induced RPE, biol rep3 |
| GSM6069401 |
RNA-seq, primary RPE, biol rep1 |
| GSM6069402 |
RNA-seq, primary RPE, biol rep2 |
| GSM6069403 |
RNA-seq, primary RPE, biol rep3 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE201677 |
Dissecting genetic components associated with eye disease using integrative genomic analysis [ATAC-seq] |
| GSE201678 |
Dissecting genetic components associated with eye disease using integrative genomic analysis [Capture HiC] |
| GSE201679 |
Dissecting genetic components associated with eye disease using integrative genomic analysis [ChIP-seq] |
| GSE201680 |
Dissecting genetic components associated with eye disease using integrative genomic analysis [RNA-seq] |
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| Relations |
| BioProject |
PRJNA832664 |
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