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Series GSE200331 Query DataSets for GSE200331
Status Public on May 16, 2022
Title Disrupted control of origin activation promotes genomic instability upon loss of POLE4 and disfunction of the TRP53-CDKN1A/P21 tumour suppressor axis.
Organism Mus musculus
Experiment type Other
Summary The maintenance of genome stability relies on the coordinated control of origin activation and replication fork progression. How the interplay between these processes impacts human genetic disease and cancer remains incompletely characterized. Here we initially show that mouse cells lacking Pole4 and featuring Pole instability exhibit impaired genome-wide activation of DNA replication origins, in a origin location-independent manner. Lack of POLE4 leads to proteasome-dependent Pole degradation prior to CMG (CDC45/MCM2-7/GINS) helicase formation and origin activation. Strikingly, Trp53 ablation in primary Pole4 knock-out cells increased Pole levels and origin activation and reduced DNA damage levels in a transcription-dependent manner. Transcriptome analysis of primary Trp53 knock out cells revealed that the TRP53-CDKN1A/P21 axis maintains appropriate levels of replication initiation factors and CDK activity during unchallenged S-phase. Loss of this control mechanism deregulates origin activation, perturbs genome-wide replication fork progression and induces fork stalling and DNA damage. Thus, while our data support an impaired origin activation model for genetic diseases affecting CMG formation, we propose that loss of the TRP53-CDKN1A/P21 tumour suppressor axis induces inappropriate origin activation and deregulates genome wide fork progression. This phenomenon has broad implications for genetic instability and therapeutic targeting in cancer.
 
Overall design Examination of the role of POLE4 in maintaining genome stability
 
Contributor(s) Bellelli R
Citation(s) 35649380
Submission date Apr 06, 2022
Last update date Aug 16, 2022
Contact name Wei Wu
Organization name Center for Excellence in Molecular Cell Science
Department Center for Excellence in Molecular Cell Science
Street address 320 yueyang road
City Shanghai
State/province Shanghai
ZIP/Postal code 200031
Country China
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (2)
GSM6031394 Wildtype splenic B cells
GSM6031395 Pole4 knockout splenic B cells
Relations
BioProject PRJNA824082

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Supplementary file Size Download File type/resource
GSE200331_RAW.tar 209.4 Mb (http)(custom) TAR (of BW)
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Raw data are available in SRA
Processed data provided as supplementary file

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