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Series GSE200241 Query DataSets for GSE200241
Status Public on Jun 28, 2023
Title Genome-wide maps of chromatin state in AML12 cells [ChIP-Seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed chromatin Immunoprecipitation (ChIP) assay followed by next-generation sequencingwith H3K9me3 and H3K27ac antibodies in WT AML12 cells to investigate the epigenetic landscape of AML12. And we performed ChIP-seq using H3K27me3 antibody in WT and MATR3-depleted AML12 cells.
 
Overall design Two replicates for each antibody and each sample.
 
Contributor(s) Wen B, Zhang Y, Cao X
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 05, 2022
Last update date Jun 29, 2023
Contact name Xuan Cao
E-mail(s) caoxuanlucky@126.com
Organization name Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences
Street address 320 Yueyang Road
City Shanghai
ZIP/Postal code 200031
Country China
 
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (7)
GSM6025392 ChIPseq_H3K27me3_AML12_Ctrl_rep1
GSM6025393 ChIPseq_H3K27me3_AML12_Ctrl_rep2
GSM6025394 ChIPseq_H3K27me3_AML12_shMatr3_rep1
This SubSeries is part of SuperSeries:
GSE200246 MATR3
Relations
BioProject PRJNA823729

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE200241_RAW.tar 1.3 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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