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| Status |
Public on Sep 28, 2022 |
| Title |
Time course mRNA-seq of in vitro decidualization of the T-HESC model |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We analyze by mRNA seq the in vitro decidualization of an immortalized human endometrial stromal cell line (T-HESC). As shown in our previous morphologic analysis (Anelli et al., Traffic 2022) T-HESC undergo a dramatic rearrangement (also at the mRNA level) of the entire the secretory pathway.
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| Overall design |
The experimental design consist in a duplicate of samples collected at eight different timepoints (0, 6, 18, 24, 36, 48, 72, 144 hrs) after initiation of the in vitro decidualization protocol.
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| Contributor(s) |
Sawarkar R, Hummel B, Van Anken E, Sitia R, Anelli T, Panina P, Pittari D |
| Citation(s) |
36313580, 39366760 |
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| Submission date |
Apr 05, 2022 |
| Last update date |
Nov 06, 2024 |
| Contact name |
Lajos Kalmar |
| E-mail(s) |
lk397@cam.ac.uk
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| Phone |
+441223335457
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| Organization name |
MRC Toxicology Unit, University of cambridge
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| Street address |
Tennis Court Road
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| City |
Cambridge |
| ZIP/Postal code |
CB2 1QR |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
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| Samples (16)
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| GSM6021915 |
T-HESC in vitro decidualization, timepoint 0 hrs (control), Replicate 1 [Set5_0_Rep1] |
| GSM6021916 |
T-HESC in vitro decidualization, timepoint 0 hrs (control), Replicate 2 [Set5_0_Rep2] |
| GSM6021917 |
T-HESC in vitro decidualization, timepoint 6 hrs, Replicate 1 [Set5_6_Rep1] |
| GSM6021918 |
T-HESC in vitro decidualization, timepoint 6 hrs, Replicate 2 [Set5_6_Rep2] |
| GSM6021919 |
T-HESC in vitro decidualization, timepoint 18 hrs, Replicate 1 [Set5_18_Rep1] |
| GSM6021920 |
T-HESC in vitro decidualization, timepoint 18 hrs, Replicate 2 [Set5_18_Rep2] |
| GSM6021921 |
T-HESC in vitro decidualization, timepoint 24 hrs, Replicate 1 [Set5_24_Rep1] |
| GSM6021922 |
T-HESC in vitro decidualization, timepoint 24 hrs, Replicate 2 [Set5_24_Rep2] |
| GSM6021923 |
T-HESC in vitro decidualization, timepoint 36 hrs, Replicate 1 [Set5_36_Rep1] |
| GSM6021924 |
T-HESC in vitro decidualization, timepoint 36 hrs, Replicate 2 [Set5_36_Rep2] |
| GSM6021925 |
T-HESC in vitro decidualization, timepoint 48 hrs, Replicate 1 [Set5_48_Rep1] |
| GSM6021926 |
T-HESC in vitro decidualization, timepoint 48 hrs, Replicate 2 [Set5_48_Rep2] |
| GSM6021927 |
T-HESC in vitro decidualization, timepoint 72 hrs, Replicate 1 [Set5_72_Rep1] |
| GSM6021928 |
T-HESC in vitro decidualization, timepoint 72 hrs, Replicate 2 [Set5_72_Rep2] |
| GSM6021929 |
T-HESC in vitro decidualization, timepoint 144 hrs, Replicate 1 [Set5_6days_Rep1] |
| GSM6021930 |
T-HESC in vitro decidualization, timepoint 144 hrs, Replicate 2 [Set5_6days_Rep2] |
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| Relations |
| BioProject |
PRJNA823667 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE200200_THESC_RawCounts.txt.gz |
999.2 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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