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Series GSE199412 Query DataSets for GSE199412
Status Public on Sep 29, 2023
Title Using Zinc-based probes to generate pseudoislets from purified human alpha-cells for functional analyses
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Investigation of the function of human alpha-cells remains a challenge due to the lack of simple and cost-effective purification methods to isolate high-quality alpha-cells from islets. Here, we introduce a novel and simple method for enriching live alpha-cells from dissociated human islet cells by using the reaction-based probe diacetylated Zinpyr1 (DA-ZP1) with > 97% purity.
 
Overall design Sorted islet cells from four islet donors were seeded in U-bottom low attachment 96 well plates (1000 cells/200 ul/well). Half of the medium was refreshed every other day for 10 days.
 
Contributor(s) Kahraman S, Kulkarni RN
Citation(s) 37732504
Submission date Mar 25, 2022
Last update date Oct 24, 2023
Contact name Jonathan M Dreyfuss
Organization name Joslin Diabetes Center
Department Bioinformatics & Biostatistics Core
Street address 1 Joslin Pl
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (33)
GSM5972363 Sample 1
GSM5972364 Sample 2
GSM5972365 Sample 3
Relations
BioProject PRJNA819965

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE199412_adjusted_counts.csv.gz 1.9 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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