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Series GSE198430 Query DataSets for GSE198430
Status Public on May 08, 2024
Title An epigenetic gene signature underlies phenotype switching in early stage melanomas [nanotstring_sample2]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary A 122-epigenetic gene signature distinguished low- versus high-risk early stage melanomas. We sought to validate the signature, examined clinical correlates in a cohort of primary melanomas of the skin, and studied the underlying transcriptomic aberrations and changes in chromatin in cell lines representing these two groups.
 
Overall design We analyzed 229 human melanoma patient samples and 12 human primary melanoma cell lines using a custom Nanostring codeset.
 
Contributor(s) Mendelson K, Martin T
Citation(s) 38319712
Submission date Mar 11, 2022
Last update date May 09, 2024
Contact name Tiphaine Christiane Martin
E-mail(s) tiphaine.martin@mssm.edu
Phone 2128248403
Organization name Icahn School of Medicine at Mount Sinai, Tisch Cancer Institute
Department Oncological Sciences
Lab Parsons
Street address 1470 Madison Ave
City New York
State/province 75459
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL32055 Nanostring nCounter human array
Samples (124)
GSM5946607 melanoma_FFPE_36 [20180208_Karen01_K01_01]
GSM5946608 melanoma_FFPE_37 [20180208_Karen01_K01_02]
GSM5946609 melanoma_FFPE_38 [20180208_Karen01_K01_03]
This SubSeries is part of SuperSeries:
GSE198432 An epigenetic gene signature underlies phenotype switching in early stage melanomas.
Relations
BioProject PRJNA815287

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE198430_RAW.tar 440.0 Kb (http)(custom) TAR (of RCC)
Processed data included within Sample table
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