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Series GSE197730 Query DataSets for GSE197730
Status Public on Mar 10, 2022
Title Highly efficient prime editing by introducing same-sense mutations in pegRNA or stabilizing its structure.
Organism Homo sapiens
Experiment type Other
Summary Prime editors (PEs) can mediate versatile genome editing but their efficiency remains low. Here, we developed spegRNA by introducing same-sense mutations at proper positions in the reverse-transcription template of pegRNA to increase PE’s single-base editing efficiency or apegRNA by altering the pegRNA secondary structure to increase PE’s indel-editing efficiency . When used in PE3 and PE5, the efficiencies of sPE3, aPE3, sPE5 and aPE5 were all enhanced significantly.
 
Overall design Development of spegRNA and apegRNA to improve PE editing efficiency
 
Contributor(s) Chen J, Yang L, Sun X, Li X, Zhou L, Gao B, Li G, Wang X, Wang Y, Wei J, Han W, Wang Z, Li J, Gao R, Zhu J, Xu W, Wu J, Yang B
Citation(s) 35351879
Submission date Mar 01, 2022
Last update date Apr 27, 2022
Contact name Li Yang
E-mail(s) liyang_fudan@fudan.edu.cn
Organization name Fudan University
Department Institutes of Biological Sciences
Street address 131 Dong-An Road
City Shanghai
ZIP/Postal code 200032
Country China
 
Platforms (2)
GPL20795 HiSeq X Ten (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (545)
GSM5929210 HEK293FT_TargetSeq_Sample_1
GSM5929211 HEK293FT_TargetSeq_Sample_2
GSM5929212 HEK293FT_TargetSeq_Sample_3
Relations
BioProject PRJNA811688

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197730_indels.xlsx 85.2 Kb (ftp)(http) XLSX
GSE197730_variations.xlsx 1.7 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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