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Series GSE197607 Query DataSets for GSE197607
Status Public on Jan 01, 2024
Title Comparison p4 CA1 pyramidal cell layer MGE derived interneuronal transcriptomes between male and female GPHNWT and GPHNS268/270A mutant mice acquired using patch sequencing techniques
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary In order to understand why blocking gephyrin phosphorylation via mutating serines 268 and 270 to alanine disrupts PV interneuron development in the hippocampus, we recorded spontaneous and elicited activity in developing MGE derived interneurons within the dorsal hippocampal CA1 pyramidal cell layer, then aspirated the contents of the cells to detect differences in the transcriptomic state between sexes and genotypes.
 
Overall design We collected acute slices from post-natal day 4 male and female GPHNWT and GPHNS268/270A mouse pups which were crossed to an Nkx2.1 Cre: Ai14 TdT background, allowing us to record electrophysiologically from TdTomato postive MGE-derived interneurons within the CA1 pyramidal cell layer, representing an enrichment of putative parvalbumin (PV) type basket cells.
 
Contributor(s) Campell B, Cruz Ochoa N, Lukacsovich D, Luo W, Földy C, Tyagarajan S
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Submission date Feb 28, 2022
Last update date Jan 01, 2024
Contact name Csaba Földy
E-mail(s) single-cell@hifo.uzh.ch
Organization name University of Zurich
Department Brain Research Institute
Lab Foldy Lab
Street address Winterthurerstrasse 190
City Zurich
State/province Zurich
ZIP/Postal code 8057
Country Switzerland
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (76)
GSM5923538 BC056
GSM5923539 BC057
GSM5923540 BC058
Relations
BioProject PRJNA811162

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197607_Data-counts.tsv.gz 5.2 Mb (ftp)(http) TSV
GSE197607_Data-no_QC-counts.tsv.gz 5.8 Mb (ftp)(http) TSV
GSE197607_Data-normed.tsv.gz 7.2 Mb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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