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| Status |
Public on Feb 02, 2023 |
| Title |
Wound memory of epidermal stem cells [bulk RNA-seq] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Trained wound-memory in epidermal cells elicits a more efficient response to future injuries, but the full spectrum of their adaptive responses and the contribution of cell lineage subsets is unknown. We performed mini bulk RNA-Seq of Lrig1 and Lgr5 stem cell progenies in the context of two consecutive skin injuries to deeply characterise lineage specific adaptation mecanisms.
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| Overall design |
RNA-seq transcriptome profiling of epidermal Lrig1 and Lgr5 stem cell progenies in the context of two consecutive skin injuries. After genetical labeling through tamoxifen application, tomato positive epidermal cells were sorted from tail skin at different time points: homeostasis (0w), one week post first wound (1w); two weeks post first wound (2w); four weeks post first wound (4w); eight weeks post first wound when a new homeostasis is re-established complete re-epithelialization (8w), one week post secon wound (9w).
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| Contributor(s) |
Levra Levron C, Watanabe M, Proserpio V, Piacenti G, Lauria A, Kaltenbach S, Nohara T, Anselmi F, Duval C, Donna D, Baev D, Natsuga K, Hagai T, Oliviero S, Giacomo D |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Feb 28, 2022 |
| Last update date |
Feb 02, 2023 |
| Contact name |
Andrea Lauria |
| E-mail(s) |
andrea.lauria@unito.it
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| Organization name |
University of Turin
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| Department |
Life Sciences and Systems Biology
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| Lab |
Functional Genomics, Epigenomics - S. Oliviero
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| Street address |
Via Accademia Albertina, 13
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| City |
Turin |
| ZIP/Postal code |
10123 |
| Country |
Italy |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (36)
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| This SubSeries is part of SuperSeries: |
| GSE197590 |
Wound memory of epidermal stem cells |
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| Relations |
| BioProject |
PRJNA811337 |
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