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GEO accession:
Series GSE196990
Query DataSets for GSE196990
Status
Public on Feb 15, 2023
Title
Durable Alterations of Hematopoiesis and Chromatin post-COVID-19
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://doi.org/10.1101/2022.02.09.479588
Citation(s)
37597510
Submission date
Feb 18, 2022
Last update date
Aug 28, 2023
Contact name
Jin-Gyu Cheong
E-mail(s)
jin.gyu.cheong88@gmail.com
Phone
9294168559
Organization name
Memorial Sloan Kettering Cancer Center
Street address
417E 68th St.
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platforms (2)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (189)
Less...
More...
GSM5711702
HDe-cd14_S3_L001
GSM5711703
HDg-cd14_S17_L002
GSM5711704
HDp-cd14_S5_L001
GSM5711705
HDq-cd34_S6_L001
GSM5711706
HDr-cd14_S7_L001
GSM5711707
HDs-cd14_S8_L001
GSM5711708
HDs-cd34_S31_L001
GSM5711709
HDt-cd34_S9_L001
GSM5711710
HDw-cd34_S33_L001
GSM5711711
jcov103-cd14_S13_L001
GSM5711712
jcov104-cd14_S14_L001
GSM5711713
jcov106-cd14_S15_L001
GSM5711714
jcov108-cd34_S17_L001
GSM5711715
jcov18-cd14_S21_L002
GSM5711716
jcov19-cd14_S19_L002
GSM5711717
jcov20-cd14_S20_L002
GSM5711718
jcov26-cd14_S21_L002
GSM5711719
jcov26-cd34_S29_L002
GSM5711720
jcov35-cd14_S23_L002
GSM5711721
jcov35-cd34_S8_L002
GSM5711722
jcov40-cd14_S24_L002
GSM5711723
jcov46-cd14_S25_L002
GSM5711724
jcov49-cd14_S26_L002
GSM5711725
jcov49-cd34_S11_L002
GSM5711726
jcov51-cd14_S27_L002
GSM5711727
jcov51-cd34_S12_L002
GSM5711728
jcov53-cd14_S19_L001
GSM5711729
jcov53-cd34_S41_L001
GSM5711730
jcov67-cd14_S28_L002
GSM5711731
jcov77-cd14_S4_L001
GSM5711732
jcov77-cd34_S14_L001
GSM5711733
jcov78-cd14_S5_L001
GSM5711734
jcov78-cd34_S15_L001
GSM5711735
jcov79-cd14_S6_L001
GSM5711736
jcov79-cd34_S16_L001
GSM5711737
jcov85-cd14_S29_L002
GSM5711738
jcov94-cd14_S20_L001
GSM5711739
HDy-cd14_S44_L001
GSM5711740
HDab-cd14_S45_L001
GSM5711741
HDaa-cd14_S46_L001
GSM5906273
HD_AD [MultiomeATAC-seq]
GSM5906274
HDa [MultiomeATAC-seq]
GSM5906275
HDj [MultiomeATAC-seq]
GSM5906276
HDu [MultiomeATAC-seq]
GSM5906277
HDv [MultiomeATAC-seq]
GSM5906278
jcov101_2 [MultiomeATAC-seq]
GSM5906279
jcov101 [MultiomeATAC-seq]
GSM5906280
jcov110 [MultiomeATAC-seq]
GSM5906281
jcov111 [MultiomeATAC-seq]
GSM5906282
jcov114 [MultiomeATAC-seq]
GSM5906283
jcov115 [MultiomeATAC-seq]
GSM5906284
jcov117 [MultiomeATAC-seq]
GSM5906285
jcov119 [MultiomeATAC-seq]
GSM5906286
jcov122 [MultiomeATAC-seq]
GSM5906287
jcov124 [MultiomeATAC-seq]
GSM5906288
jcov127 [MultiomeATAC-seq]
GSM5906289
jcov21 [MultiomeATAC-seq]
GSM5906290
jcov42_20 [MultiomeATAC-seq]
GSM5906291
jcov42 [MultiomeATAC-seq]
GSM5906292
jcov49_2 [MultiomeATAC-seq]
GSM5906293
jcov52 [MultiomeATAC-seq]
GSM5906294
jcov56_9 [MultiomeATAC-seq]
GSM5906295
jcov60_6 [MultiomeATAC-seq]
GSM5906296
jcov69_8 [MultiomeATAC-seq]
GSM5906297
jcov72_5 [MultiomeATAC-seq]
GSM5906298
jcov92 [MultiomeATAC-seq]
GSM5906299
jcov93 [MultiomeATAC-seq]
GSM5906300
lgtd17 [MultiomeATAC-seq]
GSM5906301
lgtd18 [MultiomeATAC-seq]
GSM5906302
lgtd19 [MultiomeATAC-seq]
GSM5906303
lgtd4m [MultiomeATAC-seq]
GSM5906304
lgtd8m [MultiomeATAC-seq]
GSM5906305
HD_AD [RNA-seq]
GSM5906306
HDa [RNA-seq]
GSM5906307
HDj [RNA-seq]
GSM5906308
HDu [RNA-seq]
GSM5906309
HDv [RNA-seq]
GSM5906310
jcov101_2 [RNA-seq]
GSM5906311
jcov101 [RNA-seq]
GSM5906312
jcov110 [RNA-seq]
GSM5906313
jcov111 [RNA-seq]
GSM5906314
jcov114 [RNA-seq]
GSM5906315
jcov115 [RNA-seq]
GSM5906316
jcov117 [RNA-seq]
GSM5906317
jcov119 [RNA-seq]
GSM5906318
jcov122 [RNA-seq]
GSM5906319
jcov124 [RNA-seq]
GSM5906320
jcov127 [RNA-seq]
GSM5906321
jcov21 [RNA-seq]
GSM5906322
jcov42_20 [RNA-seq]
GSM5906323
jcov42 [RNA-seq]
GSM5906324
jcov49_2 [RNA-seq]
GSM5906325
jcov52 [RNA-seq]
GSM5906326
jcov56_9 [RNA-seq]
GSM5906327
jcov60_6 [RNA-seq]
GSM5906328
jcov69_8 [RNA-seq]
GSM5906329
jcov72_5 [RNA-seq]
GSM5906330
jcov92 [RNA-seq]
GSM5906331
jcov93 [RNA-seq]
GSM5906332
lgtd17 [RNA-seq]
GSM5906333
lgtd18 [RNA-seq]
GSM5906334
lgtd19 [RNA-seq]
GSM5906335
lgtd4m [RNA-seq]
GSM5906336
lgtd8m [RNA-seq]
GSM5906337
HDf [snATAC-seq]
GSM5906338
jcov31 [snATAC-seq]
GSM7469463
cov201-cd14_S18_L002
GSM7469464
Hdi-cd14_S19_L002
GSM7469465
HDp-cd34_S28_L001
GSM7469466
HDq-cd14_S29_L001
GSM7469467
HDt-cd14_S32_L001
GSM7469468
HDw-cd14_S10_L001
GSM7469469
jcov102-cd14_S12_L001
GSM7469470
jcov102-cd34_S35_L001
GSM7469471
jcov103-cd34_S36_L001
GSM7469472
jcov107-cd14_S16_L001
GSM7469473
jcov108-cd14_S39_L001
GSM7469474
jcov47-cd14_S18_L001
GSM7469475
Jcov47-cd34_S40_L001
GSM7469476
jcov61-cd14_S23_L002
GSM7469477
jcov61-cd34_S31_L002
GSM7469478
jcov88-cd14_S30_L002
GSM7469479
jcov97-cd14_S43_L001
GSM7483245
108_1
GSM7483247
108_2
GSM7483248
110_1
GSM7483249
110_2
GSM7483250
111_1
GSM7483251
111_2
GSM7483253
128_1
GSM7483254
128_2
GSM7483255
134_1
GSM7483256
134_2
GSM7483258
135_1
GSM7483259
135_2
GSM7483260
138_1
GSM7483261
138_2
GSM7483263
23_1
GSM7483264
23_2
GSM7483265
27_1
GSM7483266
27_2
GSM7483267
34_1
GSM7483269
34_2
GSM7483270
42_1
GSM7483271
42_2
GSM7483272
56_1
GSM7483273
56_2
GSM7483275
58_1
GSM7483276
58_2
GSM7483277
59_1
GSM7483278
59_2
GSM7483280
60_1
GSM7483281
60_2
GSM7483282
64_1
GSM7483283
64_2
GSM7483284
66_1
GSM7483286
66_2
GSM7483287
75_1
GSM7483288
75_2
GSM7483289
A_1
GSM7483290
A_2
GSM7483291
AC_1
GSM7483293
AC_2
GSM7483294
B_1
GSM7483295
B_2
GSM7483296
C_1
GSM7483298
C_2
GSM7483299
G_1
GSM7483300
G_2
GSM7483301
K_1
GSM7483303
K_2
GSM7483304
Z_1
GSM7483305
Z_2
GSM7484960
MHV1_D30_AJ_BALF_Naive [MultiomeATAC-seq]
GSM7484962
MHV1_D30_AJ_BALF_Recovered_aIL6_2 [MultiomeATAC-seq]
GSM7484963
MHV1_D30_AJ_BALF_Recovered [MultiomeATAC-seq]
GSM7484964
MHV1_D30_AJ_BM_Naive [MultiomeATAC-seq]
GSM7484965
MHV1_D30_AJ_BM_Recovered_aIL6 [MultiomeATAC-seq]
GSM7484967
MHV1_D30_AJ_BM_Recovered [MultiomeATAC-seq]
GSM7484968
BMMCpie1_snATAC [MultiomeATAC-seq]
GSM7484969
PBMCpie1_snATAC [MultiomeATAC-seq]
GSM7493824
MHV1_D30_AJ_BALF_Naive
GSM7493825
MHV1_D30_AJ_BALF_Recovered_aIL6_2
GSM7493826
MHV1_D30_AJ_BALF_Recovered
GSM7493827
MHV1_D30_AJ_BM_Naive
GSM7493828
MHV1_D30_AJ_BM_Recovered_aIL6
GSM7493829
MHV1_D30_AJ_BM_Recovered
GSM7493830
BMMCpie1_snATAC
GSM7493831
PBMCpie1_snATAC
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE190004
Durable Alterations of Hematopoiesis and Chromatin post-COVID-19 [Bulk ATAC-seq]
GSE196987
Durable Alterations of Hematopoiesis and Chromatin post-COVID-19 [MultiomeATAC-seq]
GSE196988
Durable Alterations of Hematopoiesis and Chromatin post-COVID-19 [MultiomeRNA]
GSE196989
Durable Alterations of Hematopoiesis and Chromatin post-COVID-19 [snATAC-seq]
GSE234939
Durable Alterations of Hematopoiesis and Chromatin post-COVID-19 [bulkRNA-Seq]
Relations
BioProject
PRJNA808241
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE196990_RAW.tar
437.5 Mb
(http)
(custom)
TAR (of H5, RDS, TXT)
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