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Series GSE196498 Query DataSets for GSE196498
Status Public on Feb 10, 2023
Title Thrombin exerts an inflammatory role in chondrocytes through activating the MEK-Erk1/2-Stat3 signaling pathway.
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Rat chondrocytes were divided into control group (RP), thrombin group (RPT), and thrombin plus inhibitor group (RPTi). The differential genes were identified by RNA-sequencing, and verified by western blot (WB), quantitative polymerase chain reaction (qPCR), cell immunofluorescence (IF), endoplasmic reticulum (ER) staining, functional enrichment analysis, and Gene Ontology (GO).
 
Overall design To study the mechanism of thrombin regulating chondrocytes function based on RNA-sequencing and experimental verification.
 
Contributor(s) Ding D
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Feb 10, 2022
Last update date Feb 10, 2023
Contact name daofang ding
E-mail(s) dingdaofang@shutcm.edu.cn
Organization name Shanghai University of Traditional Chinese Medicine
Street address 1200 Cai Lun Road,Zhangjiang Hi-TechPark,Pudong New Area
City shanghai
ZIP/Postal code 201203
Country China
 
Platforms (1)
GPL22396 Illumina HiSeq 4000 (Rattus norvegicus)
Samples (9)
GSM5885526 RP1
GSM5885527 RP2
GSM5885528 RP3
Relations
BioProject PRJNA805215

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE196498_Gene.Count.FPKM.txt.gz 1.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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