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Status |
Public on Jun 15, 2022 |
Title |
Distinct gene expression dynamics in developing and regenerating crustacean limbs |
Organism |
Parhyale hawaiensis |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Regenerating animals have the ability to reproduce body parts that were originally made in the embryo and subsequently lost due to injury. Understanding whether the process of regeneration mirrors development is an open question in most regenerative species. Here we take a transcriptomics approach to examine to what extent leg regeneration shows the same temporal patterns of gene expression as leg development in the embryo, in the crustacean Parhyale hawaiensis. We find that leg development in the embryo shows stereotypic temporal patterns of gene expression. In contrast, global patterns of gene expression during leg regeneration show a high degree of variation, related to the physiology of individual animals. A major driver of this variation is the molting cycle. After dissecting the transcriptional signals of individual physiology from regeneration, we obtain temporal signals that mark distinct phases of leg regeneration. Comparing the transcriptional dynamics of development and regeneration we find that, although both processes use largely the same genes, the temporal patterns in which these gene sets are deployed are different and cannot be systematically aligned.
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Overall design |
Regeneration Dataset (Rd); Regeneration dataset (Rp); Development dataset (Ef and Ed): 212 mRNAseq leg samples during time courses of development or regeneration in the Crustacean Parhyale hawaiensis: 70 samples were collected during development, 60 limbs were amputated and the most-distal and moore proximal parts of the leg were collected separately throughout regeneration, for a total of 120 samples (60 samples corresponding to the regenerating most-distal part of the leg, as well as the 60 samples corresponding to the non-regenerating most distal part of the leg). 20 entire legs were collected at different moments of the molting cycle. Finally two entire legs were also collected, with to tracking of their molting stage, for the purpose of genome annotation.
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Contributor(s) |
Sinigaglia C, Almazán A, Lebel M, Sémon M, Gillet B, Hughes S, Edsinger E, Averof M, Paris M |
Citation(s) |
35776546 |
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Submission date |
Feb 10, 2022 |
Last update date |
Sep 14, 2022 |
Contact name |
Mathilde PARIS |
E-mail(s) |
mathilde.paris@ens-lyon.fr
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Organization name |
CNRS
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Lab |
IGFL
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Street address |
32-34 Av. Tony Garnier
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City |
Lyon |
ZIP/Postal code |
69007 |
Country |
France |
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Platforms (1) |
GPL31929 |
Illumina NextSeq 500 (Parhyale hawaiensis) |
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Samples (212)
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GSM5885168 |
(Rd): leg, collected 0h after amputation, adult animal 77, L side, distal part [Rd_0_L_77] |
GSM5885169 |
(Rd): leg, collected 0h after amputation, adult animal 80, L side, distal part [Rd_0_L_80] |
GSM5885170 |
(Rd): leg, collected 0h after amputation, adult animal 80, R side, distal part [Rd_0_R_80] |
GSM5885171 |
(Rd): leg, collected 0h after amputation, adult animal 81, L side, distal part [Rd_0_L_81] |
GSM5885172 |
(Rd): leg, collected 0h after amputation, adult animal 81, R side, distal part [Rd_0_R_81] |
GSM5885173 |
(Rd): leg, collected 12h after amputation, adult animal 85, R side, distal part [Rd_12_R_85] |
GSM5885174 |
(Rd): leg, collected 12h after amputation, adult animal 86, L side, distal part [Rd_12_L_86] |
GSM5885175 |
(Rd): leg, collected 12h after amputation, adult animal 86, R side, distal part [Rd_12_R_86] |
GSM5885176 |
(Rd): leg, collected 12h after amputation, adult animal 87, L side, distal part [Rd_12_L_87] |
GSM5885177 |
(Rd): leg, collected 12h after amputation, adult animal 87, R side, distal part [Rd_12_R_87] |
GSM5885178 |
(Rd): leg, collected 24h after amputation, adult animal 61, L side, distal part [Rd_24_L_61] |
GSM5885179 |
(Rd): leg, collected 24h after amputation, adult animal 61, R side, distal part [Rd_24_R_61] |
GSM5885180 |
(Rd): leg, collected 24h after amputation, adult animal 62, L side, distal part [Rd_24_L_62] |
GSM5885181 |
(Rd): leg, collected 24h after amputation, adult animal 62, R side, distal part [Rd_24_R_62] |
GSM5885182 |
(Rd): leg, collected 24h after amputation, adult animal 63, L side, distal part [Rd_24_L_63] |
GSM5885183 |
(Rd): leg, collected 24h after amputation, adult animal 63, R side, distal part [Rd_24_R_63] |
GSM5885184 |
(Rd): leg, collected 36h after amputation, adult animal 89, R side, distal part [Rd_36_R_89] |
GSM5885185 |
(Rd): leg, collected 36h after amputation, adult animal 91, L side, distal part [Rd_36_L_91] |
GSM5885186 |
(Rd): leg, collected 36h after amputation, adult animal 91, R side, distal part [Rd_36_R_91] |
GSM5885187 |
(Rd): leg, collected 36h after amputation, adult animal 92, L side, distal part [Rd_36_L_92] |
GSM5885188 |
(Rd): leg, collected 36h after amputation, adult animal 92, R side, distal part [Rd_36_R_92] |
GSM5885189 |
(Rd): leg, collected 48h after amputation, adult animal 66, L side, distal part [Rd_48_L_66] |
GSM5885190 |
(Rd): leg, collected 48h after amputation, adult animal 66, R side, distal part [Rd_48_R_66] |
GSM5885191 |
(Rd): leg, collected 48h after amputation, adult animal 67, L side, distal part [Rd_48_L_67] |
GSM5885192 |
(Rd): leg, collected 48h after amputation, adult animal 67, R side, distal part [Rd_48_R_67] |
GSM5885193 |
(Rd): leg, collected 48h after amputation, adult animal 69, L side, distal part [Rd_48_L_69] |
GSM5885194 |
(Rd): leg, collected 60h after amputation, adult animal 14, L side, distal part [Rd_60_L_14] |
GSM5885195 |
(Rd): leg, collected 60h after amputation, adult animal 14, R side, distal part [Rd_60_R_14] |
GSM5885196 |
(Rd): leg, collected 60h after amputation, adult animal 15, L side, distal part [Rd_60_L_15] |
GSM5885197 |
(Rd): leg, collected 60h after amputation, adult animal 15, R side, distal part [Rd_60_R_15] |
GSM5885198 |
(Rd): leg, collected 60h after amputation, adult animal 17, L side, distal part [Rd_60_L_17] |
GSM5885199 |
(Rd): leg, collected 72h after amputation, adult animal 38, R side, distal part [Rd_72_R_38] |
GSM5885200 |
(Rd): leg, collected 72h after amputation, adult animal 39, L side, distal part [Rd_72_L_39] |
GSM5885201 |
(Rd): leg, collected 72h after amputation, adult animal 39, R side, distal part [Rd_72_R_39] |
GSM5885202 |
(Rd): leg, collected 72h after amputation, adult animal 41, L side, distal part [Rd_72_L_41] |
GSM5885203 |
(Rd): leg, collected 72h after amputation, adult animal 41, R side, distal part [Rd_72_R_41] |
GSM5885204 |
(Rd): leg, collected 84h after amputation, adult animal 19, L side, distal part [Rd_84_L_19] |
GSM5885205 |
(Rd): leg, collected 84h after amputation, adult animal 19, R side, distal part [Rd_84_R_19] |
GSM5885206 |
(Rd): leg, collected 84h after amputation, adult animal 20, L side, distal part [Rd_84_L_20] |
GSM5885207 |
(Rd): leg, collected 84h after amputation, adult animal 20, R side, distal part [Rd_84_R_20] |
GSM5885208 |
(Rd): leg, collected 84h after amputation, adult animal 21, R side, distal part [Rd_84_R_21] |
GSM5885209 |
(Rd): leg, collected 96h after amputation, adult animal 44, L side, distal part [Rd_96_L_44] |
GSM5885210 |
(Rd): leg, collected 96h after amputation, adult animal 44, R side, distal part [Rd_96_R_44] |
GSM5885211 |
(Rd): leg, collected 96h after amputation, adult animal 45, L side, distal part [Rd_96_L_45] |
GSM5885212 |
(Rd): leg, collected 96h after amputation, adult animal 45, R side, distal part [Rd_96_R_45] |
GSM5885213 |
(Rd): leg, collected 96h after amputation, adult animal 46, L side, distal part [Rd_96_L_46] |
GSM5885214 |
(Rd): leg, collected 108h after amputation, adult animal 22, L side, distal part [Rd_108_L_22] |
GSM5885215 |
(Rd): leg, collected 108h after amputation, adult animal 22, R side, distal part [Rd_108_R_22] |
GSM5885216 |
(Rd): leg, collected 108h after amputation, adult animal 23, L side, distal part [Rd_108_L_23] |
GSM5885217 |
(Rd): leg, collected 108h after amputation, adult animal 23, R side, distal part [Rd_108_R_23] |
GSM5885218 |
(Rd): leg, collected 108h after amputation, adult animal 24, L side, distal part [Rd_108_L_24] |
GSM5885219 |
(Rd): leg, collected 120h after amputation, adult animal 50, L side, distal part [Rd_120_L_50] |
GSM5885220 |
(Rd): leg, collected 120h after amputation, adult animal 51, L side, distal part [Rd_120_L_51] |
GSM5885221 |
(Rd): leg, collected 120h after amputation, adult animal 51, R side, distal part [Rd_120_R_51] |
GSM5885222 |
(Rd): leg, collected 120h after amputation, adult animal 53, L side, distal part [Rd_120_L_53] |
GSM5885223 |
(Rd): leg, collected 120h after amputation, adult animal 53, R side, distal part [Rd_120_R_53] |
GSM5885224 |
(Rd): leg, collected Post-molth after amputation, adult animal 54, L side, distal part [Rd_Post_molt_L_54] |
GSM5885225 |
(Rd): leg, collected Post-molth after amputation, adult animal 56, L side, distal part [Rd_Post_molt_L_56] |
GSM5885226 |
(Rd): leg, collected Distal_posh after amputation, adult animal 9, R side, distal part [Rd_Distal_R_9] |
GSM5885227 |
(Rd): leg, collected Distal_posh after amputation, adult animal 11, R side, distal part [Rd_Distal_R_11] |
GSM5885228 |
(Rp): Control to regenerating leg, collected 0h after amputation, adult animal 77, L side, proximal part [Rp_0_L_77] |
GSM5885229 |
(Rp): Control to regenerating leg, collected 0h after amputation, adult animal 80, L side, proximal part [Rp_0_L_80] |
GSM5885230 |
(Rp): Control to regenerating leg, collected 0h after amputation, adult animal 80, R side, proximal part [Rp_0_R_80] |
GSM5885231 |
(Rp): Control to regenerating leg, collected 0h after amputation, adult animal 81, L side, proximal part [Rp_0_L_81] |
GSM5885232 |
(Rp): Control to regenerating leg, collected 0h after amputation, adult animal 81, R side, proximal part [Rp_0_R_81] |
GSM5885233 |
(Rp): Control to regenerating leg, collected 12h after amputation, adult animal 85, R side, proximal part [Rp_12_R_85] |
GSM5885234 |
(Rp): Control to regenerating leg, collected 12h after amputation, adult animal 86, L side, proximal part [Rp_12_L_86] |
GSM5885235 |
(Rp): Control to regenerating leg, collected 12h after amputation, adult animal 86, R side, proximal part [Rp_12_R_86] |
GSM5885236 |
(Rp): Control to regenerating leg, collected 12h after amputation, adult animal 87, L side, proximal part [Rp_12_L_87] |
GSM5885237 |
(Rp): Control to regenerating leg, collected 12h after amputation, adult animal 87, R side, proximal part [Rp_12_R_87] |
GSM5885238 |
(Rp): Control to regenerating leg, collected 24h after amputation, adult animal 61, L side, proximal part [Rp_24_L_61] |
GSM5885239 |
(Rp): Control to regenerating leg, collected 24h after amputation, adult animal 61, R side, proximal part [Rp_24_R_61] |
GSM5885240 |
(Rp): Control to regenerating leg, collected 24h after amputation, adult animal 62, L side, proximal part [Rp_24_L_62] |
GSM5885241 |
(Rp): Control to regenerating leg, collected 24h after amputation, adult animal 62, R side, proximal part [Rp_24_R_62] |
GSM5885242 |
(Rp): Control to regenerating leg, collected 24h after amputation, adult animal 63, L side, proximal part [Rp_24_L_63] |
GSM5885243 |
(Rp): Control to regenerating leg, collected 24h after amputation, adult animal 63, R side, proximal part [Rp_24_R_63] |
GSM5885244 |
(Rp): Control to regenerating leg, collected 36h after amputation, adult animal 89, R side, proximal part [Rp_36_R_89] |
GSM5885245 |
(Rp): Control to regenerating leg, collected 36h after amputation, adult animal 91, L side, proximal part [Rp_36_L_91] |
GSM5885246 |
(Rp): Control to regenerating leg, collected 36h after amputation, adult animal 91, R side, proximal part [Rp_36_R_91] |
GSM5885247 |
(Rp): Control to regenerating leg, collected 36h after amputation, adult animal 92, L side, proximal part [Rp_36_L_92] |
GSM5885248 |
(Rp): Control to regenerating leg, collected 36h after amputation, adult animal 92, R side, proximal part [Rp_36_R_92] |
GSM5885249 |
(Rp): Control to regenerating leg, collected 48h after amputation, adult animal 66, L side, proximal part [Rp_48_L_66] |
GSM5885250 |
(Rp): Control to regenerating leg, collected 48h after amputation, adult animal 66, R side, proximal part [Rp_48_R_66] |
GSM5885251 |
(Rp): Control to regenerating leg, collected 48h after amputation, adult animal 67, L side, proximal part [Rp_48_L_67] |
GSM5885252 |
(Rp): Control to regenerating leg, collected 48h after amputation, adult animal 67, R side, proximal part [Rp_48_R_67] |
GSM5885253 |
(Rp): Control to regenerating leg, collected 48h after amputation, adult animal 69, L side, proximal part [Rp_48_L_69] |
GSM5885254 |
(Rp): Control to regenerating leg, collected 60h after amputation, adult animal 14, L side, proximal part [Rp_60_L_14] |
GSM5885255 |
(Rp): Control to regenerating leg, collected 60h after amputation, adult animal 14, R side, proximal part [Rp_60_R_14] |
GSM5885256 |
(Rp): Control to regenerating leg, collected 60h after amputation, adult animal 15, L side, proximal part [Rp_60_L_15] |
GSM5885257 |
(Rp): Control to regenerating leg, collected 60h after amputation, adult animal 15, R side, proximal part [Rp_60_R_15] |
GSM5885258 |
(Rp): Control to regenerating leg, collected 60h after amputation, adult animal 17, L side, proximal part [Rp_60_L_17] |
GSM5885259 |
(Rp): Control to regenerating leg, collected 72h after amputation, adult animal 38, R side, proximal part [Rp_72_R_38] |
GSM5885260 |
(Rp): Control to regenerating leg, collected 72h after amputation, adult animal 39, L side, proximal part [Rp_72_L_39] |
GSM5885261 |
(Rp): Control to regenerating leg, collected 72h after amputation, adult animal 39, R side, proximal part [Rp_72_R_39] |
GSM5885262 |
(Rp): Control to regenerating leg, collected 72h after amputation, adult animal 41, L side, proximal part [Rp_72_L_41] |
GSM5885263 |
(Rp): Control to regenerating leg, collected 72h after amputation, adult animal 41, R side, proximal part [Rp_72_R_41] |
GSM5885264 |
(Rp): Control to regenerating leg, collected 84h after amputation, adult animal 19, L side, proximal part [Rp_84_L_19] |
GSM5885265 |
(Rp): Control to regenerating leg, collected 84h after amputation, adult animal 19, R side, proximal part [Rp_84_R_19] |
GSM5885266 |
(Rp): Control to regenerating leg, collected 84h after amputation, adult animal 20, L side, proximal part [Rp_84_L_20] |
GSM5885267 |
(Rp): Control to regenerating leg, collected 84h after amputation, adult animal 20, R side, proximal part [Rp_84_R_20] |
GSM5885268 |
(Rp): Control to regenerating leg, collected 84h after amputation, adult animal 21, R side, proximal part [Rp_84_R_21] |
GSM5885269 |
(Rp): Control to regenerating leg, collected 96h after amputation, adult animal 44, L side, proximal part [Rp_96_L_44] |
GSM5885270 |
(Rp): Control to regenerating leg, collected 96h after amputation, adult animal 44, R side, proximal part [Rp_96_R_44] |
GSM5885271 |
(Rp): Control to regenerating leg, collected 96h after amputation, adult animal 45, L side, proximal part [Rp_96_L_45] |
GSM5885272 |
(Rp): Control to regenerating leg, collected 96h after amputation, adult animal 45, R side, proximal part [Rp_96_R_45] |
GSM5885273 |
(Rp): Control to regenerating leg, collected 96h after amputation, adult animal 46, L side, proximal part [Rp_96_L_46] |
GSM5885274 |
(Rp): Control to regenerating leg, collected 108h after amputation, adult animal 22, L side, proximal part [Rp_108_L_22] |
GSM5885275 |
(Rp): Control to regenerating leg, collected 108h after amputation, adult animal 22, R side, proximal part [Rp_108_R_22] |
GSM5885276 |
(Rp): Control to regenerating leg, collected 108h after amputation, adult animal 23, L side, proximal part [Rp_108_L_23] |
GSM5885277 |
(Rp): Control to regenerating leg, collected 108h after amputation, adult animal 23, R side, proximal part [Rp_108_R_23] |
GSM5885278 |
(Rp): Control to regenerating leg, collected 108h after amputation, adult animal 24, L side, proximal part [Rp_108_L_24] |
GSM5885279 |
(Rp): Control to regenerating leg, collected 120h after amputation, adult animal 50, L side, proximal part [Rp_120_L_50] |
GSM5885280 |
(Rp): Control to regenerating leg, collected 120h after amputation, adult animal 51, L side, proximal part [Rp_120_L_51] |
GSM5885281 |
(Rp): Control to regenerating leg, collected 120h after amputation, adult animal 51, R side, proximal part [Rp_120_R_51] |
GSM5885282 |
(Rp): Control to regenerating leg, collected 120h after amputation, adult animal 53, L side, proximal part [Rp_120_L_53] |
GSM5885283 |
(Rp): Control to regenerating leg, collected 120h after amputation, adult animal 53, R side, proximal part [Rp_120_R_53] |
GSM5885284 |
(Rp): Control to regenerating leg, collected Post-molth after amputation, animal 54, L, proximal [Rp_Post_molt_L_54] |
GSM5885285 |
(Rp): Control to regenerating leg, collected Post-molth after amputation, animal 56, L, proximal [Rp_Post_molt_L_56] |
GSM5885286 |
(Rp): Control to regenerating leg, collected Distal_posh after amputation, adult animal 9, R, proximal [Rp_Distal_R_9] |
GSM5885287 |
(Rp): Control to regenerating leg, collected Distal_posh after amputation, adult animal 11, R, proximal [Rp_Distal_R_11] |
GSM5885288 |
(Ef and Ed): leg, collected 96h after fertilization, from animal 121_1, full-limb part [Ef_96_121_1] |
GSM5885289 |
(Ef and Ed): leg, collected 96h after fertilization, from animal 124_1, full-limb part [Ef_96_124_1] |
GSM5885290 |
(Ef and Ed): leg, collected 96h after fertilization, from animal 75_1, full-limb part [Ef_96_75_1] |
GSM5885291 |
(Ef and Ed): leg, collected 96h after fertilization, from animal 78_1, full-limb part [Ef_96_78_1] |
GSM5885292 |
(Ef and Ed): leg, collected 102h after fertilization, from animal 118_1, full-limb part [Ef_102_118_1] |
GSM5885293 |
(Ef and Ed): leg, collected 102h after fertilization, from animal 75_2, full-limb part [Ef_102_75_2] |
GSM5885294 |
(Ef and Ed): leg, collected 102h after fertilization, from animal 78_2, full-limb part [Ef_102_78_2] |
GSM5885295 |
(Ef and Ed): leg, collected 102h after fertilization, from animal 86_1, full-limb part [Ef_102_86_1] |
GSM5885296 |
(Ef and Ed): leg, collected 108h after fertilization, from animal 80_1, full-limb part [Ef_108_80_1] |
GSM5885297 |
(Ef and Ed): leg, collected 108h after fertilization, from animal 82_1, full-limb part [Ef_108_82_1] |
GSM5885298 |
(Ef and Ed): leg, collected 114h after fertilization, from animal 78_5, full-limb part [Ef_114_78_5] |
GSM5885299 |
(Ef and Ed): leg, collected 114h after fertilization, from animal 80_2, full-limb part [Ef_114_80_2] |
GSM5885300 |
(Ef and Ed): leg, collected 120h after fertilization, from animal 75_3, full-limb part [Ef_120_75_3] |
GSM5885301 |
(Ef and Ed): leg, collected 120h after fertilization, from animal 83_1, full-limb part [Ef_120_83_1] |
GSM5885302 |
(Ef and Ed): leg, collected 126h after fertilization, from animal 126_2, full-limb part [Ef_126_126_2] |
GSM5885303 |
(Ef and Ed): leg, collected 126h after fertilization, from animal 128_1, full-limb part [Ef_126_128_1] |
GSM5885304 |
(Ef and Ed): leg, collected 132h after fertilization, from animal 77_1, full-limb part [Ef_132_77_1] |
GSM5885305 |
(Ef and Ed): leg, collected 138h after fertilization, from animal 77_2, full-limb part [Ef_138_77_2] |
GSM5885306 |
(Ef and Ed): leg, collected 132h after fertilization, from animal 80_3, full-limb part [Ef_132_80_3] |
GSM5885307 |
(Ef and Ed): leg, collected 138h after fertilization, from animal 87_1, full-limb part [Ef_138_87_1] |
GSM5885308 |
(Ef and Ed): leg, collected 144h after fertilization, from animal 101_1, full-limb part [Ef_144_101_1] |
GSM5885309 |
(Ef and Ed): leg, collected 144h after fertilization, from animal 87_2, full-limb part [Ef_144_87_2] |
GSM5885310 |
(Ef and Ed): leg, collected 150h after fertilization, from animal 102_1, full-limb part [Ef_150_102_1] |
GSM5885311 |
(Ef and Ed): leg, collected 150h after fertilization, from animal 81_1, full-limb part [Ef_150_81_1] |
GSM5885312 |
(Ef and Ed): leg, collected 156h after fertilization, from animal 100_1, full-limb part [Ef_156_100_1] |
GSM5885313 |
(Ef and Ed): leg, collected 156h after fertilization, from animal 86_2, full-limb part [Ef_156_86_2] |
GSM5885314 |
(Ef and Ed): leg, collected 162h after fertilization, from animal 123B_1, full-limb part [Ef_162_123B_1] |
GSM5885315 |
(Ef and Ed): leg, collected 162h after fertilization, from animal 82_4, full-limb part [Ef_162_82_4] |
GSM5885316 |
(Ef and Ed): leg, collected 168h after fertilization, from animal 101_2, full-limb part [Ef_168_101_2] |
GSM5885317 |
(Ef and Ed): leg, collected 168h after fertilization, from animal 69_2, full-limb part [Ef_168_69_2] |
GSM5885318 |
(Ef and Ed): leg, collected 174h after fertilization, from animal 102_2, full-limb part [Ef_174_102_2] |
GSM5885319 |
(Ef and Ed): leg, collected 174h after fertilization, from animal 102_3, full-limb part [Ef_174_102_3] |
GSM5885320 |
(Ef and Ed): leg, collected 174h after fertilization, from animal 122_1, full-limb part [Ef_174_122_1] |
GSM5885321 |
(Ef and Ed): leg, collected 180h after fertilization, from animal 79_5, full-limb part [Ef_180_79_5] |
GSM5885322 |
(Ef and Ed): leg, collected 180h after fertilization, from animal 81_3, full-limb part [Ef_180_81_3] |
GSM5885323 |
(Ef and Ed): leg, collected 180h after fertilization, from animal 91_1, full-limb part [Ef_180_91_1] |
GSM5885324 |
(Ef and Ed): leg, collected 186h after fertilization, from animal 70_3, full-limb part [Ef_186_70_3] |
GSM5885325 |
(Ef and Ed): leg, collected 186h after fertilization, from animal 74_3, full-limb part [Ef_186_74_3] |
GSM5885326 |
(Ef and Ed): leg, collected 192h after fertilization, from animal 123B_2, full-limb part [Ef_192_123B_2] |
GSM5885327 |
(Ef and Ed): leg, collected 192h after fertilization, from animal 90_1, full-limb part [Ef_192_90_1] |
GSM5885328 |
(Ef and Ed): leg, collected 120h after fertilization, from animal 69_1, distal part [Ed_120_69_1] |
GSM5885329 |
(Ef and Ed): leg, collected 120h after fertilization, from animal 75_3, distal part [Ed_120_75_3] |
GSM5885330 |
(Ef and Ed): leg, collected 120h after fertilization, from animal 83_1, distal part [Ed_120_83_1] |
GSM5885331 |
(Ef and Ed): leg, collected 126h after fertilization, from animal 126_2, distal part [Ed_126_126_2] |
GSM5885332 |
(Ef and Ed): leg, collected 126h after fertilization, from animal 128_1, distal part [Ed_126_128_1] |
GSM5885333 |
(Ef and Ed): leg, collected 138h after fertilization, from animal 74_1, distal part [Ed_138_74_1] |
GSM5885334 |
(Ef and Ed): leg, collected 132h after fertilization, from animal 77_1, distal part [Ed_132_77_1] |
GSM5885335 |
(Ef and Ed): leg, collected 132h after fertilization, from animal 80_3, distal part [Ed_132_80_3] |
GSM5885336 |
(Ef and Ed): leg, collected 138h after fertilization, from animal 87_1, distal part [Ed_138_87_1] |
GSM5885337 |
(Ef and Ed): leg, collected 144h after fertilization, from animal 101_1, distal part [Ed_144_101_1] |
GSM5885338 |
(Ef and Ed): leg, collected 144h after fertilization, from animal 73_1, distal part [Ed_144_73_1] |
GSM5885339 |
(Ef and Ed): leg, collected 144h after fertilization, from animal 87_2, distal part [Ed_144_87_2] |
GSM5885340 |
(Ef and Ed): leg, collected 150h after fertilization, from animal 102_1, distal part [Ed_150_102_1] |
GSM5885341 |
(Ef and Ed): leg, collected 150h after fertilization, from animal 81_1, distal part [Ed_150_81_1] |
GSM5885342 |
(Ef and Ed): leg, collected 156h after fertilization, from animal 71_1, distal part [Ed_156_71_1] |
GSM5885343 |
(Ef and Ed): leg, collected 156h after fertilization, from animal 86_2, distal part [Ed_156_86_2] |
GSM5885344 |
(Ef and Ed): leg, collected 162h after fertilization, from animal 123B_1, distal part [Ed_162_123B_1] |
GSM5885345 |
(Ef and Ed): leg, collected 162h after fertilization, from animal 82_4, distal part [Ed_162_82_4] |
GSM5885346 |
(Ef and Ed): leg, collected 168h after fertilization, from animal 101_2, distal part [Ed_168_101_2] |
GSM5885347 |
(Ef and Ed): leg, collected 168h after fertilization, from animal 69_2, distal part [Ed_168_69_2] |
GSM5885348 |
(Ef and Ed): leg, collected 174h after fertilization, from animal 102_2, distal part [Ed_174_102_2] |
GSM5885349 |
(Ef and Ed): leg, collected 174h after fertilization, from animal 102_3, distal part [Ed_174_102_3] |
GSM5885350 |
(Ef and Ed): leg, collected 174h after fertilization, from animal 122_1, distal part [Ed_174_122_1] |
GSM5885351 |
(Ef and Ed): leg, collected 180h after fertilization, from animal 79_5, distal part [Ed_180_79_5] |
GSM5885352 |
(Ef and Ed): leg, collected 180h after fertilization, from animal 81_3, distal part [Ed_180_81_3] |
GSM5885353 |
(Ef and Ed): leg, collected 180h after fertilization, from animal 91_1, distal part [Ed_180_91_1] |
GSM5885354 |
(Ef and Ed): leg, collected 186h after fertilization, from animal 70_3, distal part [Ed_186_70_3] |
GSM5885355 |
(Ef and Ed): leg, collected 186h after fertilization, from animal 74_3, distal part [Ed_186_74_3] |
GSM5885356 |
(Ef and Ed): leg, collected 192h after fertilization, from animal 123B_2, distal part [Ed_192_123B_2] |
GSM5885357 |
(Ef and Ed): leg, collected 192h after fertilization, from animal 90_1, distal part [Ed_192_90_1] |
GSM5885358 |
Entire leg, from animal 82. L side, [full_limb_Pre_molt_full_L_82] |
GSM5885359 |
Entire leg, from animal 82. R side, [full_limb_Pre_molt_full_R_82] |
GSM5885360 |
Molting dataset: Entire leg, from animal 10, collected -5 days relative to molting [M-5_10] |
GSM5885361 |
Molting dataset: Entire leg, from animal 13, collected 1 days relative to molting [M+1_13] |
GSM5885362 |
Molting dataset: Entire leg, from animal 17, collected -1 days relative to molting [M-1_17] |
GSM5885363 |
Molting dataset: Entire leg, from animal 19, collected -1 days relative to molting [M-1_19] |
GSM5885364 |
Molting dataset: Entire leg, from animal 22, collected 9 days relative to molting [M+9_22] |
GSM5885365 |
Molting dataset: Entire leg, from animal 3, collected -5 days relative to molting [M-5_3] |
GSM5885366 |
Molting dataset: Entire leg, from animal 30, collected -4 days relative to molting [M-4_30] |
GSM5885367 |
Molting dataset: Entire leg, from animal 38, collected 1 days relative to molting [M+1_38] |
GSM5885368 |
Molting dataset: Entire leg, from animal 41, collected -2 days relative to molting [M-2_41] |
GSM5885369 |
Molting dataset: Entire leg, from animal 43, collected -1 days relative to molting [M-1_43] |
GSM5885370 |
Molting dataset: Entire leg, from animal 45, collected -5 days relative to molting [M-5_45] |
GSM5885371 |
Molting dataset: Entire leg, from animal 47, collected -3 days relative to molting [M-3_47] |
GSM5885372 |
Molting dataset: Entire leg, from animal 53, collected 9 days relative to molting [M+9_53] |
GSM5885373 |
Molting dataset: Entire leg, from animal 55, collected 10 days relative to molting [M+10_55] |
GSM5885374 |
Molting dataset: Entire leg, from animal 57, collected -3 days relative to molting [M-3_57] |
GSM5885375 |
Molting dataset: Entire leg, from animal 58, collected 2 days relative to molting [M+2_58] |
GSM5885376 |
Molting dataset: Entire leg, from animal 59, collected -1 days relative to molting [M-1_59] |
GSM5885377 |
Molting dataset: Entire leg, from animal 61, collected 1 days relative to molting [M+1_61] |
GSM5885378 |
Molting dataset: Entire leg, from animal 64, collected -5 days relative to molting [M-5_64] |
GSM5885379 |
Molting dataset: Entire leg, from animal 8, collected 9 days relative to molting [M+9_8] |
|
Relations |
BioProject |
PRJNA805179 |
Supplementary file |
Size |
Download |
File type/resource |
GSE196485_All_212_samples_abundance_gene_est_counts_Fragment_candidates_from_Dmel_and_Pacbio_hits_added.txt.gz |
26.4 Mb |
(ftp)(http) |
TXT |
GSE196485_All_212_samples_abundance_gene_tpm_Fragment_candidates_from_Dmel_and_Pacbio_hits_added.txt.gz |
32.5 Mb |
(ftp)(http) |
TXT |
GSE196485_Annotation_Reg_Embryo_500_cleanOverlap0.5_3.gtf.gz |
3.7 Mb |
(ftp)(http) |
GTF |
GSE196485_Dataset_S2_Annotation_Reg_Embryo_500_flag_Fragmentation_Dmel_Duplication_PacBio_v4.csv.gz |
621.0 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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