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Series GSE196473 Query DataSets for GSE196473
Status Public on Oct 24, 2022
Title Transcriptomic profiles of porcine PBMC from nonimmune and ASFV-immune pigs upon in vitro stimulation
Organism Sus scrofa
Experiment type Expression profiling by high throughput sequencing
Summary We describe the transcriptomic recall response to African swine fever virus (ASFV) upon in vitro stimulation in porcine peripheral blood mononuclear cells (PBMC) obtained three weeks after receiving an intranasal dose of 106 pfu of the live attenuated BA71ΔCD2 vaccine prototype. PBMC from 4 unvaccinated and 4 vaccinated pigs were stimulated with BA71ΔCD2 or left untreated for 10 hours, RNA was extracted, and bulk RNA-sequencing was performed. Major transcriptional changes were found in BA71ΔCD2-stimulated samples from vaccinated pigs. Indeed, compared to unvaccinated control pigs, cells from vaccinated animals showed an upregulation of genes corresponding to a robust Th1 response. Together with this adaptive immune response, we also distinguished an innate immune response characterized by the expression of macrophage-related inflammatory genes. Altogether, our results demonstrate that intranasal vaccination of pigs with BA71ΔCD2 induce a systemic Th1 memory response that is concomitant with a rapid enhancement of innate immunity upon in vitro activation. 
 
Overall design Transcriptomic profiles of PBMC from 4 control unvaccinated pigs and 4 pigs vaccinated with the live attenuated BA71ΔCD2 prototype (three weeks after vaccination), in vitro stimulated with BA71ΔCD2 or left untreated for 10 hours.
 
Contributor(s) Argilaguet J, Esteve-Codina A, Martín-Mur B, Dabad M, Bosch-Camós L, Alonso U, Gavrilov B, Rodríguez F
Citation(s) 36350837
Submission date Feb 10, 2022
Last update date Feb 01, 2023
Contact name Jordi Argilaguet
E-mail(s) jordi.argilaguet@gmail.com
Organization name IRTA
Department CReSA
Street address Campus de la Universitat Autònoma de Barcelona, Edifici CReSA s/n
City Cerdanyola del Vallès (Bellaterra)
State/province Spain
ZIP/Postal code 08193
Country Spain
 
Platforms (1)
GPL26351 Illumina NovaSeq 6000 (Sus scrofa)
Samples (16)
GSM5884790 129_rpmi
GSM5884791 129_asfv
GSM5884792 133_rpmi
Relations
BioProject PRJNA805111

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Supplementary file Size Download File type/resource
GSE196473_COUNTS_genes_RODRIGUEZFER_01.tsv.gz 734.6 Kb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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