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Series GSE19622 Query DataSets for GSE19622
Status Public on Mar 15, 2010
Title Individual-specific and allele-specific chromatin signatures in diverse human populations
Project ENCODE
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This dataset contains DNase-seq data and CTCF ChIP-seq data for 6 lymphoblastoid cell lines. There are 3 cell lines from a YRI trio and 3 lines from a CEU trio (HapMap GM19238, GM19239, GM 19240, GM12891, GM12892, GM12878).

For data usage terms and conditions, please refer to and
Overall design DNase-seq and ChIP-seq data from each of the 6 cell lines.
Web link
Contributor(s) Iyer VR, Crawford GE
Citation(s) 20299549, 21750106, 21106903
BioProject PRJNA63443
Submission date Dec 23, 2009
Last update date May 15, 2019
Contact name Vishy Iyer
Phone 5122327833
Organization name University of Texas at Austin
Department Molecular Biosciences
Street address 2500 Speedway Dr. MBB 3.212
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
Platforms (1)
GPL9052 Illumina Genome Analyzer (Homo sapiens)
Samples (26)
GSM489277 GM12878_DNAse_REP1
GSM489278 GM12878_DNAse_REP2
GSM489279 GM12878_DNAse_REP3
This SubSeries is part of SuperSeries:
GSE30227 Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
GSE32883 Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
SRA SRP002002

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE19622_RAW.tar 7.2 Gb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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