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Series GSE194233 Query DataSets for GSE194233
Status Public on Jun 16, 2022
Title Thymic epithelial cells co-opt lineage-defining transcription factors to eliminate autoreactive T cells [scATAC-seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We profiled medullary thymic epithelial cells from AireWT vs AireKO mice by scATAC-seq to investigate mechanisms of T-cell tolerance.
 
Overall design scATAC-seq of mTEC
 
Contributor(s) Michelson DA, Mathis D, Benoist C
Citation(s) 35714609
Submission date Jan 23, 2022
Last update date Aug 30, 2022
Contact name CBDM Lab
E-mail(s) cbdm@hms.harvard.edu
Phone 617-432-7747
Organization name Harvard Medical School
Department Microbiology and Immunobiology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM5831325 AireWT.mTEChi.rep#1
GSM5831326 AireWT.mTEChi.rep#2
GSM5831327 AireKO.mTEChi.rep#1
This SubSeries is part of SuperSeries:
GSE194253 Thymic epithelial cells co-opt lineage-defining transcription factors to eliminate autoreactive T cells
Relations
BioProject PRJNA799773

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE194233_RAW.tar 3.0 Gb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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