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GEO accession:
Series GSE193968
Query DataSets for GSE193968
Status
Public on Dec 05, 2022
Title
Enhancer-instructed chromatin folding and compartmentalization dictate Vκ repertoire rearrangement to combat bacterial infection
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Jan 19, 2022
Last update date
Dec 06, 2022
Contact name
Edgar Mauricio Barajas-Mora
E-mail(s)
barajas.mauricio@gmail.com
Organization name
UCSD
Department
Molecular BIology
Street address
9500 Gilman Dr, La Jolla, CA
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platforms (1)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (32)
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GSM5821814
pre-B cells RAG-/- u+ ATAseq WT_1
GSM5821815
pre-B cells RAG-/- u+ ATACseq WT_2
GSM5821816
pre-B cells RAG-/- u+ ATACseq E34.KO_1
GSM5821817
pre-B cells RAG-/- u+ ATACseq E34.KO_2
GSM5822249
pre-B cells RAG-/- u+ CTCF WT_1
GSM5822250
pre-B cells RAG-/- u+ CTCF WT_2
GSM5822251
pre-B cells RAG-/- u+ CTCF E34.KO_1
GSM5822252
pre-B cells RAG-/- u+ CTCF E34.KO_2
GSM5822253
pre-B cells RAG-/- u+ H3K4me1 WT_1
GSM5822254
pre-B cells RAG-/- u+ H3K4me1 WT_2
GSM5822255
pre-B cells RAG-/- u+ H3K4me1 E34.KO_1
GSM5822256
pre-B cells RAG-/- u+ H3K4me1 E34.KO_2
GSM5822257
pre-B cells RAG-/- u+ H3K27ac WT_1
GSM5822258
pre-B cells RAG-/- u+ H3K27ac WT_2
GSM5822259
pre-B cells RAG-/- u+ H3K27ac E34.KO_1
GSM5822260
pre-B cells RAG-/- u+ H3K27ac E34.KO_2
GSM5822261
pre-B cells RAG-/- u+ H3K9me3 WT_1
GSM5822262
pre-B cells RAG-/- u+ H3K9me3 WT_2
GSM5822263
pre-B cells RAG-/- u+ H3K9me3 E34.KO_1
GSM5822264
pre-B cells RAG-/- u+ H3K9me3 E34.KO_2
GSM5822265
pre-B cells RAG-/- u+ H3K27me3 WT_1
GSM5822266
pre-B cells RAG-/- u+ H3K27me3 WT_2
GSM5822267
pre-B cells RAG-/- u+ H3K27me3 E34.KO_1
GSM5822268
pre-B cells RAG-/- u+ H3K27me3 E34.KO_2
GSM5822617
pre-B cells RAG-/- µ+ RNA WT_1
GSM5822618
pre-B cells RAG-/- µ+ RNA WT_2
GSM5822619
pre-B cells RAG-/- µ+ E34.KO_1
GSM5822620
pre-B cells RAG-/- µ+ E34.KO_2
GSM5824393
Bone marrow-derived CD19+ cells RAG-/- µ+ HiC WT_1
GSM5824394
Bone marrow-derived CD19+ cells RAG-/- µ+ HiC WT_2
GSM5824395
Bone marrow-derived CD19+ cells RAG-/- µ+ HiC E34.KO_1
GSM5824396
Bone marrow-derived CD19+ cells RAG-/- µ+ HiC E34.KO_2
This SuperSeries is composed of the following SubSeries:
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GSE193813
Enhancer-instructed chromatin folding and compartmentalization dictate Vκ repertoire rearrangement to combat bacterial infection [ATAC-seq]
GSE193822
Enhancer-instructed chromatin folding and compartmentalization dictate Vκ repertoire rearrangement to combat bacterial infection [CUT&RUN]
GSE193846
Enhancer-instructed chromatin folding and compartmentalization dictate Vκ repertoire rearrangement to combat bacterial infection [RNA-seq]
GSE193967
Enhancer-instructed chromatin folding and compartmentalization dictate Vκ repertoire rearrangement to combat bacterial infection [Hi-C]
Relations
BioProject
PRJNA798659
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Supplementary file
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File type/resource
GSE193968_RAW.tar
6.9 Gb
(http)
(custom)
TAR (of BIGWIG, HIC)
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