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Series GSE193543 Query DataSets for GSE193543
Status Public on Jan 28, 2023
Title Non-protective immune imprint underlies failure of S. aureus IsdB vaccine
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The failure to date of all S. aureus vaccine trials has been a conundrum and underlines fundamental flaws in current translational models. A major difference between humans and laboratory animals is the early and frequent exposure of humans to S. aureus compared to animals, which is not accounted for in vaccine studies. In recapitulating the failed IsdB human vaccine trial, we showed that mice previously infected with S. aureus do not mount a protective vaccine antibody response, unlike naïve mice. S. aureus infection induces robust but non-neutralizing anti-IsdB antibodies that target different but overlapping IsdB epitopes compared to IsdB vaccine. In the setting of prior S. aureus infection, however, IsdB vaccine recalls the non-protective humoral response which further competes and reduces efficacy of protective vaccine-generated specific antibodies. Vaccination against the heme-binding domain of IsdB or select IsdB epitope can overcome interference by S. aureus infection. Using an adoptive transfer model, we showed that human serum antibodies against IsdB and another vaccine target, ClfA, are also non-protective and blocked anti-staphylococcal immunity conferred by passive immunizations. Overall, our study demonstrates proof of concept that failure of anti-S. aureus active and passive immunizations could be explained by non-protective imprint of prior host-pathogen interaction.
 
Overall design Single-cell immune profiling of the S. aureus IsdB vaccine. In this study, we conducted BCR sequencing for three different samples: LAC (LAC-infected mice given adjuvant alone), LAC/IsdB (LAC-infected mice vaccinated with IsdB) and N/IsdB (Naïve mice vaccinated with IsdB).
 
Contributor(s) Lewis NE, Liu GY
Citation(s) 35803276
Submission date Jan 12, 2022
Last update date Jan 30, 2023
Contact name Nathan E. Lewis
E-mail(s) n4lewis@ucsd.edu
Organization name University of California, San Diego
Department Pediatrics
Street address 9500 Gilman Dr.
City San Diego
State/province CA
ZIP/Postal code 92123
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (3)
GSM5814002 N/IsdB
GSM5814003 LAC
GSM5814004 LAC/IsdB
Relations
BioProject PRJNA796575

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Supplementary file Size Download File type/resource
GSE193543_RAW.tar 1.8 Mb (http)(custom) TAR (of CSV, FASTA)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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