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| Status |
Public on Jun 23, 2022 |
| Title |
PHF20 Activates Autophagy Genes through Enhancer Activation via H3K36me2 Binding Activity |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
35821310 |
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| Submission date |
Jan 10, 2022 |
| Last update date |
Aug 24, 2022 |
| Contact name |
Se Won Park |
| E-mail(s) |
pswpjk0909@gmail.com
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| Organization name |
Seoul national university
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| Street address |
Gwanak-ro 1, Gwanak-gu, Seoul, Seoul Nat'l Univ Bldg504 Rm607
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| City |
Seoul |
| State/province |
Gwanak-Gu |
| ZIP/Postal code |
08826 |
| Country |
South Korea |
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| Platforms (2) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (28)
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| GSM5776729 |
WT, GlcStarv, ATAC-seq, rep2 |
| GSM5776730 |
Phf20-/-, control, ATAC-seq, rep1 |
| GSM5776731 |
Phf20-/-, control, ATAC-seq, rep2 |
| GSM5776732 |
Phf20-/-, GlcStarv, ATAC-seq, rep1 |
| GSM5776733 |
Phf20-/-, GlcStarv, ATAC-seq, rep2 |
| GSM5776749 |
WT, control, ChIP-seq, Input |
| GSM5776750 |
WT, control, ChIP-seq, H3K4me1 |
| GSM5776751 |
WT, control, ChIP-seq, H3K4me2 |
| GSM5776752 |
WT, GlcStarv, ChIP-seq, Input |
| GSM5776753 |
WT, GlcStarv, ChIP-seq, H3K4me1 |
| GSM5776754 |
WT, GlcStarv, ChIP-seq, H3K4me2 |
| GSM5776755 |
Phf20-/-, control, ChIP-seq, Input |
| GSM5776756 |
Phf20-/-, control, ChIP-seq, H3K4me1 |
| GSM5776757 |
Phf20-/-, control, ChIP-seq, H3K4me2 |
| GSM5776758 |
Phf20-/-, GlcStarv, ChIP-seq, Input |
| GSM5776759 |
Phf20-/-, GlcStarv, ChIP-seq, H3K4me1 |
| GSM5776760 |
Phf20-/-, GlcStarv, ChIP-seq, H3K4me2 |
| GSM5799507 |
WT, control, RNA-seq, rep1 |
| GSM5799508 |
WT, control, RNA-seq, rep2 |
| GSM5799509 |
WT, GlcStarv, RNA-seq, rep1 |
| GSM5799510 |
WT, GlcStarv, RNA-seq, rep2 |
| GSM5799511 |
Phf20-/-, control, RNA-seq, rep1 |
| GSM5799512 |
Phf20-/-, control, RNA-seq, rep2 |
| GSM5799513 |
Phf20-/-, GlcStarv, RNA-seq, rep1 |
| GSM5799514 |
Phf20-/-, GlcStarv, RNA-seq, rep2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE193215 |
PHF20 Activates Autophagy Genes through Enhancer Activation via H3K36me2 Binding Activity [ATAC-seq] |
| GSE193217 |
PHF20 Activates Autophagy Genes through Enhancer Activation via H3K36me2 Binding Activity [ChIP-seq] |
| GSE193392 |
PHF20 Activates Autophagy Genes through Enhancer Activation via H3K36me2 Binding Activity [RNA-seq] |
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| Relations |
| BioProject |
PRJNA796013 |
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