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| Status |
Public on Mar 04, 2022 |
| Title |
In-depth molecular profiling specifies human retinal microglia identity |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Microglia are the tissue-resident macrophages of the retina and brain, being critically involved in organ development, tissue homeostasis, and response to cellular damage. Until now, little is known about the transcriptional profile of human retinal microglia and how they differentiate from peripheral monocytes, as well as from brain microglia. Additionally, the degree to which mice are suitable models for human retinal microglia is still not clear. The present study applies fluorescence-activated cell sorting to isolate human retinal microglia from enucleated eyes and compares their transcriptional profile with that of whole retinal tissue, as well as classical, intermediate and non-classical monocytes. In addition, human retinal microglia are compared to murine retinal microglia, isolated from at least two-years old Cx3cr1GFP/+ mice, as well as human brain microglia obtained from the literature. Several overexpressed genes were identified in retinal microglia when compared to whole retinal tissue, as well as classical, intermediate, and non-classical monocytes, among them IL1B, C2, C3, TREM2, P2RY12 and SPP1. In relation to whole retina sequencing, several risk genes, such as APOE and TGBR1, as well as PLXDC2 and ARHGAP22 associated with age-related macular degeneration (AMD) and diabetic retinopathy (DRP), were preferentially expressed in retinal microglia, indicating their potential pathophysiological involvement. The top expressed genes exhibited a strong consistency between retinal and brain microglia, among them CD74, SPP1, ACTB, FTL and C3. There was a high degree of similarity between human and murine retinal microglia, although there were several species-specific genes, revealing for which genes mice are suitable models for human retinal microglia. This study provides detailed insights into the molecular profile of human retinal microglia and indicate a high similarity to brain microglia. It advances our under-standing about their role in human retinal disease, such as AMD and DRP. The similarities and differences between human and mice will facilitate the transferability of knowledge between both species.
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| Overall design |
RNA sequencing of 5 retinal microglia (FACS: CD45+ CD11b+ CX3CR1+ MatMac+ CCR2-), 6 classical monocytes (FACS: CD45+ CD11b+ CX3CR1+ CD14++ CD16- ), 5 intermediate monocytes (FACS: CD45+ CD11b+ CX3CR1+ CD14++ CD16+), 5 non-classical monocytes (FACS: CD45+ CD11b+ CX3CR1+ CD14- CD16++ cells), 6 retinal samples
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| Contributor(s) |
Wolf J, Boneva S, Rosmus D, Agostini H, Schlunck G, Wieghofer P, Schlecht A, Lange C |
| Citation(s) |
35371110 |
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| Submission date |
Jan 06, 2022 |
| Last update date |
Apr 07, 2022 |
| Contact name |
Clemens Lange |
| Organization name |
Uniklinik Freiburg
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| Department |
Klinik für Augenheilkunde
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| Street address |
Kilianstraße 5
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| City |
Freiburg |
| ZIP/Postal code |
79106 |
| Country |
Germany |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (48)
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| Relations |
| BioProject |
PRJNA795163 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE193161_data.csv.gz |
8.1 Mb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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