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Series GSE190129 Query DataSets for GSE190129
Status Public on Dec 05, 2021
Title Quiescent human glioblastoma cancer stem cells mediate tumor initiation, expansion, and recurrence following chemotherapy
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We performed single cell RNA sequencing with eight patient derived xenograft samples to identify quiescent cancer stem cells in glioblastoma. Additionally two samples treated with temozolomide was sequenced to examine the evolution of the cancer stem cells upon chemotherapeutics.
 
Overall design whole transcriptome single cell RNA sequencing with 10X method
 
Contributor(s) Xie XP, Laks DR, Ganbold M, Parada LF
Citation(s) 35016005
Submission date Dec 03, 2021
Last update date Mar 07, 2022
Contact name Mungunsarnai Ganbold
Organization name MSKCC
Department Brain Tumor Center
Lab Parada Lab
Street address 417 East 68st
City New York
State/province NYC
ZIP/Postal code 10065
Country USA
 
Platforms (3)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (36)
GSM5714943 Human GBM Tumor sample 1 [180327-1]
GSM5714944 Human GBM Tumor sample 2 [180518-1]
GSM5714945 Human GBM Tumor sample 3 [170911-1]
Relations
BioProject PRJNA785966
SRA SRP349152

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190129_RAW.tar 152.9 Mb (http)(custom) TAR (of CSV, TXT)
GSE190129_humanGBM_bulkRNA_F3sort.csv.gz 501.4 Kb (ftp)(http) CSV
GSE190129_mouseGBM_bulkRNA_GFPsort.csv.gz 641.2 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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