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| Status |
Public on Aug 11, 2022 |
| Title |
Comprehensive Analysis of Chromatin Accessibility Changes during Muscle Stem Cell Quiescence Exit and Self-renewal |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
36093058 |
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| Submission date |
Nov 18, 2021 |
| Last update date |
Nov 10, 2022 |
| Contact name |
Tom Cheung |
| Organization name |
Hong Kong University of Science and Technology
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| Department |
Division of Life Science
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| Street address |
Clear Water Bay, Kowloon
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| City |
Hong Kong |
| ZIP/Postal code |
N/A |
| Country |
Hong Kong |
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| Platforms (2) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL28457 |
DNBSEQ-G400 (Mus musculus) |
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| Samples (68)
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| GSM5693749 |
0.5hpi, ATAC Rep2 |
| GSM5693750 |
1hpi, ATAC Rep1 |
| GSM5693751 |
1hpi, ATAC Rep2 |
| GSM5693752 |
2hpi, ATAC Rep1 |
| GSM5693753 |
2hpi, ATAC Rep2 |
| GSM5693754 |
4hpi, ATAC Rep1 |
| GSM5693755 |
4hpi, ATAC Rep2 |
| GSM5693756 |
8hpi, ATAC Rep1 |
| GSM5693757 |
8hpi, ATAC Rep2 |
| GSM5693758 |
16hpi, ATAC Rep1 |
| GSM5693759 |
16hpi, ATAC Rep2 |
| GSM5693760 |
32hpi, ATAC Rep1 |
| GSM5693761 |
32hpi, ATAC Rep2 |
| GSM5693762 |
60hpi, ATAC Rep1 |
| GSM5693763 |
60hpi, ATAC Rep2 |
| GSM5693764 |
7dpi, ATAC Rep1 |
| GSM5693765 |
7dpi, ATAC Rep2 |
| GSM5693766 |
14dpi, ATAC Rep1 |
| GSM5693767 |
14dpi, ATAC Rep2 |
| GSM5693768 |
28dpi, ATAC Rep1 |
| GSM5693769 |
28dpi, ATAC Rep2 |
| GSM5693770 |
oQSC, ATAC Rep1 |
| GSM5693771 |
oQSC, ATAC Rep2 |
| GSM5693772 |
oFISC, ATAC Rep1 |
| GSM5693773 |
oFISC, ATAC Rep2 |
| GSM5693774 |
oASC, ATAC Rep1 |
| GSM5693775 |
oASC, ATAC Rep2 |
| GSM5693811 |
ASC H3K27ac, ChIP-seq, Rep 1 |
| GSM5693812 |
ASC H3K27ac, ChIP-seq, Rep 1 Input |
| GSM5693813 |
ASC H3K27ac, ChIP-seq, Rep 2 |
| GSM5693814 |
ASC H3K27ac, ChIP-seq, Rep 2 Input |
| GSM5693815 |
FISC H3K27ac, ChIP-seq, Rep 1 |
| GSM5693816 |
FISC H3K27ac, ChIP-seq, Rep 1 Input |
| GSM5693817 |
FISC H3K27ac, ChIP-seq, Rep 2 |
| GSM5693818 |
FISC H3K27ac, ChIP-seq, Rep 2 Input |
| GSM5694265 |
uninjured, RNA Rep1 |
| GSM5694266 |
uninjured, RNA Rep2 |
| GSM5694267 |
0.5hpi, RNA Rep1 |
| GSM5694268 |
0.5hpi, RNA Rep2 |
| GSM5694269 |
1hpi, RNA Rep1 |
| GSM5694270 |
1hpi, RNA Rep2 |
| GSM5694271 |
2hpi, RNA Rep1 |
| GSM5694272 |
2hpi, RNA Rep2 |
| GSM5694273 |
4hpi, RNA Rep1 |
| GSM5694274 |
4hpi, RNA Rep2 |
| GSM5694275 |
8hpi, RNA Rep1 |
| GSM5694276 |
8hpi, RNA Rep2 |
| GSM5694277 |
16hpi, RNA Rep1 |
| GSM5694278 |
16hpi, RNA Rep2 |
| GSM5694279 |
32hpi, RNA Rep1 |
| GSM5694280 |
32hpi, RNA Rep2 |
| GSM5694281 |
60hpi, RNA Rep1 |
| GSM5694282 |
60hpi, RNA Rep2 |
| GSM5694283 |
7dpi, RNA Rep1 |
| GSM5694284 |
7dpi, RNA Rep2 |
| GSM5694285 |
14dpi, RNA Rep1 |
| GSM5694286 |
14dpi, RNA Rep2 |
| GSM5694287 |
28dpi, RNA Rep1 |
| GSM5694288 |
28dpi, RNA Rep2 |
| GSM5694289 |
oQSC, RNA Rep1 |
| GSM5694290 |
oQSC, RNA Rep2 |
| GSM5694291 |
oFISC, RNA Rep1 |
| GSM5694292 |
oFISC, RNA Rep2 |
| GSM5694293 |
oASC, RNA Rep1 |
| GSM5694294 |
oASC, RNA Rep2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE189044 |
Chromatin structure profiling of mouse muscle stem cells by ATAC-seq |
| GSE189046 |
Histone modifications in activated and freshly isolated mouse muscle stem cells by ChIP-seq |
| GSE189073 |
Transcriptome sequencing analysis of satellite cells by RNA-seq |
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| Relations |
| BioProject |
PRJNA781459 |
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