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Series GSE188642 Query DataSets for GSE188642
Status Public on Dec 17, 2021
Title Single-cell RNA sequencing of repopulated microglia at day 3
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To probe potential molecular mechanisms underlying the differences between wild-type and Hk2-cKO microglia during repopulation, we performed the single-cell RNA sequencing (scRNA-seq) of repopulated microglia at Day 3. Microglia were isolated by FACS as CD11b high CD45 low cells from normal brains and Hk2-cKO brains.
 
Overall design Hk2 fl/fl and Hk2 cKO repopulated microglia at day3 were isolated by FACS as CD11b high CD45 low cells.
 
Contributor(s) Gao Z, Hu Y, Cao K
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BioProject PRJNA773981
Submission date Nov 11, 2021
Last update date Dec 19, 2021
Contact name weiying wu
E-mail(s) wuweiying@zju.edu.cn
Phone 19883131534
Organization name Zhejiang University
Street address 866 Yuhangtang Rd
City Hangzhou
State/province Zhejiang
ZIP/Postal code 310027
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (2)
GSM5687531 Hk2 fl/fl repopulated microglia
GSM5687532 Hk2 cKO repopulated microglia

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE188642_RAW.tar 53.0 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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