|
| Status |
Public on Dec 30, 2021 |
| Title |
Landscape of human spinal cord cell type diversity at midgestation |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
In this study we performed single cell and single nucleus RNA sequencing of PCW17 and PCW18 human spinal cord
|
| |
|
| Overall design |
We profiled a total of 4 samples. Two PCW17 samples and two PCW18 samples were collected, with one sample per timepoint processed as single cells and one sample processed as single nuclei. In addition, some cells were immunopanned for Th1y and some nuclei were sorted for NeuN.
*** Raw data not provided due to patient privacy concerns ***
|
| |
|
| Contributor(s) |
Pasca S, Andersen J, Thom N |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Nov 09, 2021 |
| Last update date |
Jan 03, 2022 |
| Contact name |
Jimena Andersen |
| E-mail(s) |
jimenandersen@googlemail.com
|
| Organization name |
Stanford University
|
| Street address |
318 Campus Drive, Clark Center, 2nd floor/W200
|
| City |
Palo Alto |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (17)
|
|
| Relations |
| BioProject |
PRJNA779158 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE188516_GEO_RNA_barcodes.tsv.gz |
618.7 Kb |
(ftp)(http) |
TSV |
| GSE188516_GEO_RNA_counts.mtx.gz |
1.5 Gb |
(ftp)(http) |
MTX |
| GSE188516_GEO_RNA_features.tsv.gz |
117.7 Kb |
(ftp)(http) |
TSV |
| GSE188516_GEO_spliced_barcodes.tsv.gz |
618.7 Kb |
(ftp)(http) |
TSV |
| GSE188516_GEO_spliced_counts.mtx.gz |
775.7 Mb |
(ftp)(http) |
MTX |
| GSE188516_GEO_spliced_features.tsv.gz |
96.8 Kb |
(ftp)(http) |
TSV |
| GSE188516_GEO_unspliced_barcodes.tsv.gz |
618.7 Kb |
(ftp)(http) |
TSV |
| GSE188516_GEO_unspliced_counts.mtx.gz |
699.6 Mb |
(ftp)(http) |
MTX |
| GSE188516_GEO_unspliced_features.tsv.gz |
101.7 Kb |
(ftp)(http) |
TSV |
| GSE188516_metadata.tsv.gz |
962.6 Kb |
(ftp)(http) |
TSV |
| Raw data not provided for this record |
| Processed data are available on Series record |
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