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Series GSE188516 Query DataSets for GSE188516
Status Public on Dec 30, 2021
Title Landscape of human spinal cord cell type diversity at midgestation
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary In this study we performed single cell and single nucleus RNA sequencing of PCW17 and PCW18 human spinal cord
 
Overall design We profiled a total of 4 samples. Two PCW17 samples and two PCW18 samples were collected, with one sample per timepoint processed as single cells and one sample processed as single nuclei. In addition, some cells were immunopanned for Th1y and some nuclei were sorted for NeuN.
*** Raw data not provided due to patient privacy concerns ***
 
Contributor(s) Pasca S, Andersen J, Thom N
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 09, 2021
Last update date Jan 03, 2022
Contact name Jimena Andersen
E-mail(s) jimenandersen@googlemail.com
Organization name Stanford University
Street address 318 Campus Drive, Clark Center, 2nd floor/W200
City Palo Alto
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (17)
GSM5684405 w18_cells_1
GSM5684406 w18_cells_2
GSM5684407 w18_cells_3
Relations
BioProject PRJNA779158

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE188516_GEO_RNA_barcodes.tsv.gz 618.7 Kb (ftp)(http) TSV
GSE188516_GEO_RNA_counts.mtx.gz 1.5 Gb (ftp)(http) MTX
GSE188516_GEO_RNA_features.tsv.gz 117.7 Kb (ftp)(http) TSV
GSE188516_GEO_spliced_barcodes.tsv.gz 618.7 Kb (ftp)(http) TSV
GSE188516_GEO_spliced_counts.mtx.gz 775.7 Mb (ftp)(http) MTX
GSE188516_GEO_spliced_features.tsv.gz 96.8 Kb (ftp)(http) TSV
GSE188516_GEO_unspliced_barcodes.tsv.gz 618.7 Kb (ftp)(http) TSV
GSE188516_GEO_unspliced_counts.mtx.gz 699.6 Mb (ftp)(http) MTX
GSE188516_GEO_unspliced_features.tsv.gz 101.7 Kb (ftp)(http) TSV
GSE188516_metadata.tsv.gz 962.6 Kb (ftp)(http) TSV
Raw data not provided for this record
Processed data are available on Series record

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