|
| Status |
Public on Nov 08, 2021 |
| Title |
DNA hydroxymethylation profiling of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using hMeDIP-seq |
| Organisms |
Strongylocentrotus purpuratus; Branchiostoma lanceolatum; Danio rerio |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Using hMeDIP-seq we validated the single-base resolution hydroxymethylomes (ACE-seq) of sea urchin, lancelet and zebrafish embryos.
|
| |
|
| Overall design |
hMeDIP-seq was perfomred on (i) purple sea urchin 72 hpf embryos; (ii) european lancelet 36 hpf embryo; (iii) zebrafish 24 hpf embryo (in replicates). Input DNA sequencing has been performed in parallel.
|
| |
|
| Contributor(s) |
Skvortsova K, Bogdanovic O |
| Citation(s) |
36459547 |
| |
| Submission date |
Nov 06, 2021 |
| Last update date |
Mar 20, 2024 |
| Contact name |
Ksenia Skvortsova |
| E-mail(s) |
k.skvortsova@garvan.org.au
|
| Phone |
478135210
|
| Organization name |
Garvan Institute
|
| Department |
Genomics and Epigenetics
|
| Lab |
Developmental Epigenomics
|
| Street address |
384 Victoria St, Darlinghurst
|
| City |
Sydney |
| State/province |
NSW |
| ZIP/Postal code |
2010 |
| Country |
Australia |
| |
|
| Platforms (3) |
| GPL23085 |
HiSeq X Ten (Danio rerio) |
| GPL25186 |
HiSeq X Ten (Branchiostoma lanceolatum) |
| GPL30935 |
HiSeq X Ten (Strongylocentrotus purpuratus) |
|
| Samples (8)
|
|
| This SubSeries is part of SuperSeries: |
| GSE188334 |
Base-resolution 5-hydroxymethylcytosine maps of sea urchin and lancelet embryos and adult tissues |
|
| Relations |
| BioProject |
PRJNA778392 |
| SRA |
SRP344878 |
Less...
More...