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Series GSE185715 Query DataSets for GSE185715
Status Public on Oct 15, 2021
Title Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues
Organisms Homo sapiens; Mus musculus
Experiment type Other
Summary Method to perform spatial analysis of mRNA in FFPE and PFA fixed tissue sections using spatially barcoded slides and based on oligo(dT) mRNA capture.
Overall design Whole-genome transcriptomic profiling of formalin-fixed tissue sections
Contributor(s) Ludvig L, Eva Gracia V
Citation(s) 36776149
Submission date Oct 12, 2021
Last update date Mar 02, 2023
Contact name Ludvig Ale Larsson
Phone +46739911122
Organization name SciLifeLab
Department Gene Technology
Street address Tomtebodavägen 23A
City Solna
State/province Stockholm
ZIP/Postal code 17165
Country Sweden
Platforms (2)
GPL30172 NextSeq 2000 (Mus musculus)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (14)
GSM5621965 PFA fixed kidney_organoid_1
GSM5621966 PFA fixed kidney_organoid_2
GSM5621967 PFA fixed kidney_organoid_3
BioProject PRJNA770617
SRA SRP340981

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185715_RAW.tar 2.1 Gb (http)(custom) TAR (of CSV, H5, JPG, JSON, PNG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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