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Series GSE185215 Query DataSets for GSE185215
Status Public on Jan 10, 2024
Title A phenotypic screening platform for identifying chemical modulators of astrocyte reactivity
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.

Disease, injury, and aging induce pathological reactive astrocyte states that contribute to neurodegeneration. Modulating reactive astrocytes therefore represents an attractive therapeutic strategy. Here, we describe the development of an astrocyte phenotypic screening platform for identifying chemical modulators of astrocyte reactivity. Leveraging this platform for chemical screening, we identify HDAC3 inhibitors as effective suppressors of pathological astrocyte reactivity. We demonstrate that HDAC3 inhibition reduces molecular and functional characteristics of reactive astrocytes in vitro. Transcriptional and chromatin mapping studies show that HDAC3 inhibition disarms pathological astrocyte gene expression and function while promoting the expression of genes associated with beneficial astrocytes. Administration of RGFP966, a small molecule HDAC3 inhibitor, blocks reactive astrocyte formation and promotes neuroprotection in vivo in mice. Collectively, these results establish a platform for discovering modulators of reactive astrocyte states, inform the mechanisms that control astrocyte reactivity, and demonstrate the therapeutic benefits of modulating astrocyte reactivity for neurodegenerative diseases.
 
Overall design Refer to individual Series
 
Citation(s) 38378993
Submission date Oct 03, 2021
Last update date Apr 12, 2024
Contact name Benjamin L.L. Clayton
E-mail(s) blc49@case.edu
Organization name Case Western Reserve University
Department Genetics and Genome Sciences
Lab Paul Tesar
Street address 2109 Adelbert Rd BRB739A
City Cleveland
State/province OH
ZIP/Postal code 44118
Country USA
 
Platforms (3)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (97)
GSM5588978 Reactive Astrocytes
GSM5588979 Resting Astrocytes
GSM5608122 Resting_A
This SuperSeries is composed of the following SubSeries:
GSE184437 A phenotypic screening platform for identifying chemical modulators of astrocyte reactivity [scRNAseq]
GSE185212 A phenotypic screening platform for identifying chemical modulators of astrocyte reactivity [bulkRNA-seq]
GSE185605 A phenotypic screening platform for identifying chemical modulators of astrocyte reactivity [ATAC-seq]
Relations
BioProject PRJNA768277

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185215_RAW.tar 7.2 Gb (http)(custom) TAR (of BROADPEAK, BW, MTX, NARROWPEAK, TSV)
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