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GEO accession:
Series GSE184757
Query DataSets for GSE184757
Status
Public on Jan 10, 2025
Title
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Methylation profiling by genome tiling array
Other
Methylation profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
39826545
Submission date
Sep 24, 2021
Last update date
Apr 11, 2025
Contact name
Martin Bizet
E-mail(s)
mbizet@ulb.ac.be
Organization name
Université Libre de Bruxelles
Lab
Cancer Epigenetics
Street address
CP614 route de Lennik 808
City
Bruxelles
ZIP/Postal code
1070
Country
Belgium
Platforms (7)
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GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21145
Infinium MethylationEPIC
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL30172
NextSeq 2000 (Mus musculus)
GPL32685
Illumina Infinium MouseMethylation array (MouseMethylation-12v1-0_A2)
GPL33022
Illumina Infinium MethylationEPIC version 2
Samples (306)
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GSM5596988
Wild Type HeLa replicate 1.1
GSM5596989
METTL3 knocked out HeLa replicate 1.1
GSM5596990
METTL3 knocked out HeLa replicate 1.3
GSM5596991
Wild Type HeLa replicate 1.2
GSM5596992
METTL3 knocked out HeLa replicate 1.2
GSM5596993
Wild Type HeLa replicate 1.3
GSM5596994
METTL3 knocked out HeLa replicate 2.1
GSM5596995
Wild Type HeLa replicate 2.1
GSM5596996
Wild Type HeLa replicate 2.2
GSM5596997
METTL3 knocked out HeLa replicate 2.2
GSM5596998
Wild Type HeLa replicate 2.3
GSM5596999
METTL3 knocked out HeLa replicate 2.3
GSM5597000
Wild Type HeLa replicate 3.1
GSM5597001
METTL3 knocked out HeLa replicate 3.1
GSM5597002
Wild Type HeLa replicate 3.3
GSM5597003
METTL3 knocked out HeLa replicate 3.2
GSM5597004
METTL3 knocked out HeLa replicate 3.3
GSM5597005
Wild Type HeLa replicate 3.2
GSM5597022
HeLa-WT-1-m6A
GSM5597023
HeLa-WT-2-m6A
GSM5597024
HeLa-WT-3-m6A
GSM5597025
HeLa-WT-INPUT
GSM6738729
Wild Type mouse EB (day 8) replicate 1
GSM6738730
METTL3 knocked out mouse EB (day 8) replicate 1
GSM6738731
METTL3 knocked out mouse EB (day 8) replicate 2
GSM6738732
METTL3 knocked out mouse EB (day 8) replicate 3
GSM6738733
Wild Type mouse EB (day 8) replicate 3
GSM6738734
Wild Type mouse EB (day 8) replicate 2
GSM6738735
EBd8-WT-1-m6A
GSM6738736
EBd8-WT-2-m6A
GSM6738737
EBd8-WT-3-m6A
GSM6738738
EBd8-WT-1-INPUT
GSM6738739
EBd8-WT-2-INPUT
GSM6738740
EBd8-WT-3-INPUT
GSM6738741
EBd8-METTL3KO-1-RNA
GSM6738742
EBd8-METTL3KO-2-RNA
GSM6738743
EBd8-METTL3KO-3-RNA
GSM6738744
ES-WT-1-RNA
GSM6738745
ES-WT-2-RNA
GSM6738746
ES-WT-3-RNA
GSM6738747
HeLa-METTL3KO-1-RNA
GSM6738748
HeLa-METTL3KO-2-RNA
GSM6738749
HeLa-METTL3KO-3-RNA
GSM6738750
HeLa-METTL3KO-4-RNA
GSM6738751
HeLa-WT-1-RNA
GSM6738752
HeLa-WT-2-RNA
GSM6738753
HeLa-WT-3-RNA
GSM6738754
HeLa-WT-4-RNA
GSM8410725
HeLa-M3KO-0h-1
GSM8410726
HeLa-M3KO-0h-2
GSM8410727
HeLa-M3KO-0h-3
GSM8410728
HeLa-M3KO-4h-1
GSM8410729
HeLa-M3KO-4h-2
GSM8410730
HeLa-M3KO-4h-3
GSM8410731
HeLa-M3KO-6h-1
GSM8410732
HeLa-M3KO-6h-2
GSM8410733
HeLa-M3KO-6h-3
GSM8410734
HeLa-M3KO-8h-1
GSM8410735
HeLa-M3KO-8h-2
GSM8410736
HeLa-M3KO-8h-3
GSM8410737
HeLa-WT-0h-1
GSM8410738
HeLa-WT-0h-2
GSM8410739
HeLa-WT-0h-3
GSM8410740
HeLa-WT-4h-1
GSM8410741
HeLa-WT-4h-2
GSM8410742
HeLa-WT-4h-3
GSM8410743
HeLa-WT-6h-1
GSM8410744
HeLa-WT-6h-2
GSM8410745
HeLa-WT-6h-3
GSM8410746
HeLa-WT-8h-1
GSM8410747
HeLa-WT-8h-2
GSM8410748
HeLa-WT-8h-3
GSM8410758
ES-M14KO-2h-1
GSM8410759
ES-M14KO-2h-2
GSM8410760
ES-M14KO-2h-3
GSM8410761
ES-M14KO-4h-1
GSM8410762
ES-M14KO-4h-2
GSM8410763
ES-M14KO-4h-3
GSM8410764
ES-M14KO-8h-1
GSM8410765
ES-M14KO-8h-2
GSM8410766
ES-M14KO-8h-3
GSM8410767
ES-M14KO-NT-1
GSM8410768
ES-M14KO-NT-2
GSM8410769
ES-M14KO-NT-3
GSM8410770
ES-WT-2h-1
GSM8410771
ES-WT-2h-2
GSM8410772
ES-WT-2h-3
GSM8410773
ES-WT-4h-1
GSM8410774
ES-WT-4h-2
GSM8410775
ES-WT-4h-3
GSM8410776
ES-WT-8h-1
GSM8410777
ES-WT-8h-2
GSM8410778
ES-WT-8h-3
GSM8410779
ES-WT-NT-1
GSM8410780
ES-WT-NT-2
GSM8410781
ES-WT-NT-3
GSM8410782
Mock-treated HeLa replicate 1 (METTL3i control)
GSM8410783
METTL3i-treated HeLa replicate 1
GSM8410784
METTL3i-treated HeLa replicate 2
GSM8410785
Mock-treated HeLa replicate 2 (METTL3i control)
GSM8410786
Mock-treated HeLa replicate 3 (METTL3i control)
GSM8410787
METTL3i-treated HeLa replicate 3
GSM8410788
Mock-treated HeLa replicate 1 (FTOi control)
GSM8410789
FTOi-treated HeLa replicate 1
GSM8410790
Mock-treated HeLa replicate 2 (FTOi control)
GSM8410791
FTOi-treated HeLa replicate 2
GSM8410792
Mock-treated HeLa replicate 3 (FTOi control)
GSM8410793
FTOi-treated HeLa replicate 3
GSM8410794
Wild Type HeLa replicate 1 (METTL3 KO clone 2 control)
GSM8410795
METTL3 knocked out HeLa clone 2 replicate 1
GSM8410796
Wild Type HeLa replicate 2 (METTL3 KO clone 2 control)
GSM8410797
METTL3 knocked out HeLa clone 2 replicate 2
GSM8410798
Wild Type HeLa replicate 3 (METTL3 KO clone 2 control)
GSM8410799
METTL3 knocked out HeLa clone 2 replicate 3
GSM8410800
RNAi control HeLa replicate 2
GSM8410801
RNAi DNMT3B HeLa replicate 1
GSM8410802
RNAi DNMT3A HeLa replicate 1
GSM8410803
RNAi control HeLa replicate 4
GSM8410804
RNAi SETD2 HeLa replicate 2
GSM8410805
RNAi SETD2 HeLa replicate 1
GSM8410806
RNAi DNMT1 HeLa replicate 2
GSM8410807
RNAi DNMT3B HeLa replicate 2
GSM8410808
RNAi DNMT3A HeLa replicate 3
GSM8410809
RNAi DNMT1 HeLa replicate 3
GSM8410810
RNAi SETD2 HeLa replicate 3
GSM8410811
RNAi DNMT3B HeLa replicate 3
GSM8410812
RNAi DNMT1 HeLa replicate 1
GSM8410813
RNAi control HeLa replicate 1
GSM8410814
RNAi DNMT3A HeLa replicate 2
GSM8410815
RNAi control HeLa replicate 3
GSM8410820
EBd8-WT-1.1-m6A
GSM8410821
EBd8-WT-1.2-m6A
GSM8410822
EBd8-WT-1-INPUT (2)
GSM8410823
EBd8-WT-2.1-m6A
GSM8410824
EBd8-WT-2.2-m6A
GSM8410825
EBd8-WT-2-INPUT (2)
GSM8410826
EBd8-WT-3.1-m6A
GSM8410827
EBd8-WT-3.2-m6A
GSM8410828
EBd8-WT-3-INPUT (2)
GSM8410829
ES-WT-1-INPUT
GSM8410830
ES-WT-1-m6A
GSM8410831
ES-WT-2-INPUT
GSM8410832
ES-WT-2-m6A
GSM8410833
ES-WT-3,1-m6A
GSM8410834
ES-WT-3,2-m6A
GSM8410835
ES-WT-3-INPUT
GSM8410836
ES-WTclon5-1-INP
GSM8410837
ES-WTclon5-1-m6A
GSM8410838
ES-WTclon5-2-INP
GSM8410839
ES-WTclon5-2-m6A
GSM8410840
ES-WTclon5-3-INP
GSM8410841
ES-WTclon5-3-m6A
GSM8410842
ES-INP-0h-1
GSM8410843
ES-INP-0h-2
GSM8410844
ES-INP-0h-3
GSM8410845
ES-INP-24h-1
GSM8410846
ES-INP-24h-2
GSM8410847
ES-INP-24h-3
GSM8410848
ES-INP-3h-1
GSM8410849
ES-INP-3h-2
GSM8410850
ES-INP-3h-3
GSM8410851
ES-m6A-0h-1
GSM8410852
ES-m6A-0h-2.1
GSM8410853
ES-m6A-0h-2.2
GSM8410854
ES-m6A-0h-3.1
GSM8410855
ES-m6A-0h-3.2
GSM8410856
ES-m6A-24h-1
GSM8410857
ES-m6A-24h-2.1
GSM8410858
ES-m6A-24h-2.2
GSM8410859
ES-m6A-24h-3.1
GSM8410860
ES-m6A-24h-3.2
GSM8410861
ES-m6A-3h-1
GSM8410862
ES-m6A-3h-2.1
GSM8410863
ES-m6A-3h-2.2
GSM8410864
ES-m6A-3h-3.1
GSM8410865
ES-m6A-3h-3.2
GSM8410866
Wild Type mouse ES rep-1
GSM8410867
Mettl3 knocked out mouse ES rep-1
GSM8410868
Wild Type mouse ES (Dnmt1 KO control) rep-1
GSM8410869
Dnmt1 knocked out mouse ES rep-2
GSM8410870
WT mouse ES rep-3
GSM8410871
Dnmt1 knocked out mouse ES rep-3
GSM8410872
Wild Type mouse ES (Dnmt1 KO control) rep-3
GSM8410873
Dnmt1 knocked out mouse ES rep-1
GSM8410874
Mettl3 knocked out mouse ES rep-3
GSM8410875
Wild Type mouse ES rep-2
GSM8410876
Wild Type mouse ES (Dnmt1 KO control) rep-2
GSM8410877
Mettl3 knocked out mouse ES rep-2
GSM8410878
Wild Type mouse ES (Mettl14 KO control) rep-1
GSM8410879
Mettl14 knocked out mouse ES rep-1
GSM8410880
Full length rescued Mettl14 knocked out mouse ES rep-1
GSM8410881
Delta RGG rescued Mettl14 knocked out mouse ES rep-1
GSM8410882
Wild Type mouse EB (Mettl14 KO control) rep-1
GSM8410883
Mettl14 knocked out mouse EB rep-1
GSM8410884
Full length rescued Mettl14 knocked out mouse EB rep-1
GSM8410885
Delta RGG rescued Mettl14 knocked out mouse EB rep-1
GSM8410886
Mettl14 knocked out mouse ES rep-2
GSM8410887
Full length rescued Mettl14 knocked out mouse EB rep-3
GSM8410888
Full length rescued Mettl14 knocked out mouse ES rep-2
GSM8410889
Delta RGG rescued Mettl14 knocked out mouse ES rep-2
GSM8410890
Wild Type mouse EB (Mettl14 KO control) rep-2
GSM8410891
Mettl14 knocked out mouse EB rep-2
GSM8410892
Full length rescued Mettl14 knocked out mouse EB rep-2
GSM8410893
Delta RGG rescued Mettl14 knocked out mouse EB rep-2
GSM8410894
Wild Type mouse ES (Mettl14 KO control) rep-3
GSM8410895
Mettl14 knocked out mouse ES rep-3
GSM8410896
Full length rescued Mettl14 knocked out mouse ES rep-3
GSM8410897
Delta RGG rescued Mettl14 knocked out mouse ES rep-3
GSM8410898
Wild Type mouse EB (Mettl14 KO control) rep-3
GSM8410899
Mettl14 knocked out mouse EB rep-3
GSM8410900
Delta RGG rescued Mettl14 knocked out mouse EB rep-3
GSM8410901
Wild Type mouse ES (Mettl14 KO control) rep-2
GSM8410902
Untreated Wild Type mouse ES rep-1
GSM8410903
DRB treated Wild Type mouse ES rep-1
GSM8410904
Untreated Wild Type mouse ES rep-3
GSM8410905
Untreated Wild Type mouse ES rep-2
GSM8410906
DRB treated Wild Type mouse ES rep-3
GSM8410907
Untreated Wild Type mouse ES rep-4
GSM8410908
Mettl3i treated Wild Type mouse ES rep-2
GSM8410909
Untreated Wild Type mouse ES rep-5
GSM8410910
Untreated Wild Type mouse ES rep-6
GSM8410911
Mettl3i treated Wild Type mouse ES rep-1
GSM8410912
Mettl3i treated Wild Type mouse ES rep-3
GSM8410913
DRB treated Wild Type mouse ES rep-2
GSM8410914
3 hours differentiated Wild Type mouse ES rep-2
GSM8410915
0 hour differentiated Wild Type mouse ES rep-2
GSM8410916
0 hour differentiated Wild Type mouse ES rep-3
GSM8410917
24 hours differentiated Wild Type mouse ES rep-3
GSM8410918
24 hours differentiated Wild Type mouse ES rep-1
GSM8410919
3 hours differentiated Wild Type mouse ES rep-1
GSM8410920
0 hour differentiated Wild Type mouse ES rep-1
GSM8410921
3 hours differentiated Wild Type mouse ES rep-3
GSM8410922
24 hours differentiated Wild Type mouse ES rep-2
GSM8410923
HeLa-METTL3KO-1-INPUT
GSM8410924
HeLa-METTL3KO-1-m6A
GSM8410925
HeLa-METTL3KO-2-INPUT
GSM8410926
HeLa-METTL3KO-2-m6A
GSM8410927
HeLa-METTL3KO-3-INPUT
GSM8410928
HeLa-METTL3KO-3-m6A
GSM8410929
HeLa-WT-for-differential-1-INPUT
GSM8410930
HeLa-WT-for-differential-1-m6A
GSM8410931
HeLa-WT-for-differential-2-INPUT
GSM8410932
HeLa-WT-for-differential-2-m6A
GSM8410933
HeLa-WT-for-differential-3-INPUT
GSM8410934
HeLa-WT-for-differential-3-m6A
GSM8411050
HeLa-M3KO-1.1-polysome
GSM8411051
HeLa-M3KO-1.1-Subpolysome
GSM8411052
HeLa-M3KO-1.2-polysome
GSM8411053
HeLa-M3KO-1.2-Subpolysome
GSM8411054
HeLa-M3KO-2.1-polysome
GSM8411055
HeLa-M3KO-2.1-Subpolysome
GSM8411056
HeLa-M3KO-2.2-polysome
GSM8411057
HeLa-M3KO-2.2-Subpolysome
GSM8411058
HeLa-WT-1.1-polysome
GSM8411059
HeLa-WT-1.1-Subpolysome
GSM8411060
HeLa-WT-1.2-polysome
GSM8411061
HeLa-WT-1.2-Subpolysome
GSM8411062
HeLa-WT-2.1-polysome
GSM8411063
HeLa-WT-2.1-Subpolysome
GSM8411064
HeLa-WT-2.2-polysome
GSM8411065
HeLa-WT-2.2-Subpolysome
GSM8411066
T0_Rep1
GSM8411067
T0_Rep2
GSM8411068
T0_Rep3
GSM8411069
T12_Rep1
GSM8411070
T12_Rep2
GSM8411071
T12_Rep3
GSM8411072
T24_Rep1
GSM8411073
T24_Rep2
GSM8411074
T24_Rep3
GSM8411075
T3_Rep1
GSM8411076
T3_Rep2
GSM8411077
T3_Rep3
GSM8411078
EBd8-Mettl14KO-1
GSM8411079
EBd8-Mettl14KO-2
GSM8411080
EBd8-Mettl14KO-3
GSM8411081
EBd8-Mettl14KOR442K-1
GSM8411082
EBd8-Mettl14KOR442K-2
GSM8411083
EBd8-Mettl14KOR442K-3
GSM8411084
EBd8-WT-1
GSM8411085
EBd8-WT-2
GSM8411086
EBd8-WT-3
GSM8411087
ES-Mettl14KO-1
GSM8411088
ES-Mettl14KO-2
GSM8411089
ES-Mettl14KO-3
GSM8411090
ES-Mettl14KOR442K-1
GSM8411091
ES-Mettl14KOR442K-2
GSM8411092
ES-Mettl14KOR442K-3
GSM8411093
ES-WT-1
GSM8411094
ES-WT-2
GSM8411095
ES-WT-3
GSM8411150
D1KO_no4SU
GSM8411151
D1KO_rep1
GSM8411152
D1KO_rep2
GSM8411153
D1KO_rep3
GSM8411154
M3i_rep1
GSM8411155
M3i_rep2
GSM8411156
M3i_rep3
GSM8411157
WT_no4SU
GSM8411158
WT_SP_no4SU
GSM8411159
WT_SP_rep1
GSM8411160
WT_SP_rep2
GSM8411161
WT_SP_rep3
GSM8411162
WT_unt_rep1
GSM8411163
WT_unt_rep2
GSM8411164
WT_unt_rep3
This SuperSeries is composed of the following SubSeries:
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GSE184754
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa and EB [5mC in HeLa]
GSE184756
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa and EB [m6A in HeLa]
GSE218291
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB [5mC in ES and EB]
GSE218292
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB [m6A in ES and EB and RNAseq in EB]
GSE218293
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa and EB [RNAseq in HeLa]
GSE272780
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB [ActinoD in HeLa]
GSE272782
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB [ActinoD in E14TG2a ES]
GSE272783
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa and EB [5mC in RNAi-treated HeLa]
GSE272787
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB [Polysome seq in HeLa]
GSE272788
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB [PROseq in E14TG2a ES/EB]
GSE272789
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB [RNAseq in Mettl14KO and rescued in E14TG2a ES/EB]
GSE272791
Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB [SLAM seq in J1 ES]
Relations
BioProject
PRJNA766061
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Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
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GSE184757_RAW.tar
2.5 Gb
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TAR (of BW, IDAT, TSV, TXT)
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