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GEO accession:
Series GSE183876
Query DataSets for GSE183876
Status
Public on Dec 22, 2021
Title
Epigenetic basis of oncogenic-Kras mediated epithelial-cellular proliferation and plasticity
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35134344
Submission date
Sep 10, 2021
Last update date
Apr 01, 2022
Contact name
Preetish Kadur Lakshminarasimha Murthy
E-mail(s)
pk434@cornell.edu
Organization name
Duke University
Street address
101 Science Dr
City
Durham
State/province
NC
ZIP/Postal code
27708
Country
USA
Platforms (6)
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GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL21273
HiSeq X Ten (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (68)
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GSM5572988
SK Week 4-1
GSM5572989
SK Week 4-2
GSM5572990
SK Week 4-3
GSM5572991
SC AEC2-1
GSM5572992
SC AEC2-2
GSM5572993
SC AEC2-3
GSM5572994
SC AEC2-4
GSM5572995
CK Week 4-1
GSM5572996
CK Week 4-2
GSM5572997
CK Week 10-1
GSM5572998
CK Week 10-2
GSM5572999
CK Week 16-1
GSM5573000
CK Week 16-2
GSM5573001
CK Week 16-3
GSM5573002
CK Week 16-4
GSM5573003
CK Week 22-1
GSM5573004
CK Week 22-2
GSM5573005
CK Week 22-3
GSM5573006
CC CC10+ AEC2-1
GSM5573007
CC CC10+ AEC2-2
GSM5573008
CC CC10+ AEC2-3
GSM5573009
CC Club-1
GSM5573010
CC Club-2
GSM5573011
CC CC10- AEC2-1
GSM5573012
CC CC10- AEC2-2
GSM5573013
CC CC10- AEC2-3
GSM5573014
CK Tumour Excised Week 22-1
GSM5573015
CK Tumour Excised Week 22-2
GSM5573016
Intestine Lgr5 Ctrl-1
GSM5573017
Intestine Lgr5 Kras-1
GSM5573018
Intestine Lgr5 Ctrl-2
GSM5573019
Intestine Lgr5 Kras-2
GSM5573020
Intestine Lgr5 Ctrl Week 5
GSM5573021
Intestine Lgr5 Kras Week 5
GSM5573022
Intestine Lgr5 Ctrl Week 17
GSM5573023
Intestine Lgr5 Kras Week 17
GSM5573024
Intestine Lgr5 Ctrl Week 25-1
GSM5573025
Intestine Lgr5 Kras Week 25-1
GSM5573026
Intestine Lgr5 Ctrl Week 25-2
GSM5573027
Intestine Lgr5 Kras Week 25-2
GSM5573028
SPC_FosL1_Kras4w_tumour_tdTom+GF-1
GSM5573029
SPC_FosL1_Kras4w_tumour_tdTom+GF-2
GSM5573030
Normal_Epcam+_BRPC-18-529
GSM5573031
PDX_Epcam+_14-405
GSM5573032
Normal_Epcam+_BRPC-19-056
GSM5573033
SK Week 2-1
GSM5573034
SK Week 2-2
GSM5573035
KP_779
GSM5573036
KP_MIT
GSM5573037
RNAseq_4wTumour_1
GSM5573038
RNAseq_4wTumour_2
GSM5573039
RNAseq_4wTumour_3
GSM5573040
RNAseq_AEC2_1
GSM5573041
RNAseq_AEC2_2
GSM5573042
RNAseq_AEC2_3
GSM5573043
Control 1
GSM5573044
Control 2
GSM5573045
CK_6_weeks
GSM5746452
KP tumour cell line 1_FOSL1_ChIP_rep1
GSM5746453
KP tumour cell line 1_FOSL1_ChIP_rep2
GSM5746454
KP tumour cell line 2_FOSL1_ChIP_rep1
GSM5746455
KP tumour cell line 2_FOSL1_ChIP_rep2
GSM5746456
4w SK tumour_FOSL1_ChIP
GSM5746457
KP tumour cell line 1_input_control_rep1
GSM5746458
KP tumour cell line 1_input_control_rep2
GSM5746459
KP tumour cell line 2_input_control_rep1
GSM5746460
KP tumour cell line 2_input_control_rep2
GSM5746461
4w SK tumour_input_control
This SuperSeries is composed of the following SubSeries:
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GSE183873
Epigenetic basis of oncogenic-Kras mediated epithelial-cellular proliferation and plasticity [ATAC-seq]
GSE183874
Epigenetic basis of oncogenic-Kras mediated epithelial-cellular proliferation and plasticity [RNA-Seq]
GSE183875
Epigenetic basis of oncogenic-Kras mediated epithelial-cellular proliferation and plasticity [scRNA-seq]
GSE192406
Epigenetic basis of oncogenic-Kras mediated epithelial-cellular proliferation and plasticity [Mint-ChIP)
Relations
BioProject
PRJNA762252
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE183876_RAW.tar
894.6 Mb
(http)
(custom)
TAR (of BIGWIG, NARROWPEAK, TSV)
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