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Series GSE181898 Query DataSets for GSE181898
Status Public on Feb 08, 2022
Title Peptide nano-blanket impedes fibroblasts activation and subsequent formation of pre-metastatic niche
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Here we report an enzyme-activatable assembled peptide FR17 that can serve as a “flame-retarding blanket” at pre-metastatic niche (PMN) specifically to extinguish the “fire” of tumor-supportive microenvironment adaption. Our experiment demonstrated that the assembled peptide successfully reversed extracellular matrix deposition, vascular leakage and angiogenesis through inhibition on fibroblasts activation in PMN, which suppressed the remodeling of metastasis-supportive host stromal, and further prevented the recruitment of myeloid cells to PMN and then recovered the immunosuppressive microenvironment. Cell transcriptomic analysis of the pulmonary recruited MDSC suggested that FR17 intervention could regulate immune response activation, immune cells chemotaxis and migration pathways. Consequently, FR17 administration effectively inhibited pulmonary PMN formation and postoperative metastasis of melanoma, with only 30% lung-metastasis occurrence was observed for FR17 treated group at the time point when 100% occurrence was observed for the control group and 80% occurrence for anti-PD1 treated group, offering a robust therapeutic strategy against PMN establishing to prevent metastasis.
 
Overall design A total of 4 samples were analyzed, including control (Ctrl), TP5, sFD17 and FR17. RNA preparations were extracted from CD11b+Ly6g+ myeloid-derived supperssor cells (MDSCs) sorted from lungs pooled from 10-12 mice from each group per sample.
Web link https://www.nature.com/articles/s41467-022-30634-8
 
Contributor(s) Zhou Y, Ke P
Citation(s) 35614076
BioProject PRJNA752692
Submission date Aug 11, 2021
Last update date Jun 01, 2022
Contact name Yi Zhou
E-mail(s) zhouyi2013@zju.edu.cn
Phone +86-15700080562
Organization name Zhejiang University
Street address Yuhangtang Road 866
City Hangzhou
State/province Zhejiang
ZIP/Postal code 310000
Country China
 
Platforms (1)
GPL30501 Illumina novaseq 6000 (Mus musculus)
Samples (4)
GSM5513980 pulmonary recruited CD11b+Ly6g+ MDSCs - Ctrl
GSM5513981 pulmonary recruited CD11b+Ly6g+ MDSCs - TP5
GSM5513982 pulmonary recruited CD11b+Ly6g+ MDSCs - sFD17

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE181898_RAW.tar 29.1 Mb (http)(custom) TAR (of XLSX)
GSE181898_gene_count.txt.gz 2.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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