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Series GSE181506 Query DataSets for GSE181506
Status Public on Nov 01, 2023
Title Effect of anti-CD20 treatment on the composition and gene expression of meningeal ectopic lymphoid tissue and CSFin a spontaneous EAE model, using single cell gene expression .
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Objective: To investigate how anti-CD20 B cell-depleting monoclonal antibodies (ɑCD20 mAb) alter the composition and gene expression of immune cells in meningeal ectopic lymphoid tissue (mELT) and the CSF in a murine model of Multiple Sclerosis (MS). Methods: We utilized a spontaneous chronic experimental autoimmune encephalomyelitis (EAE) model of mice with mutant T and B cell receptors specific for myelin oligodendrocyte glycoprotein (MOG), which develop meningeal inflammatory infiltrates resembling those described in Multiple Sclerosis (MS). We studied the changes in cell composition and gene expression after anti-CD20 treatment in mELT and CSF.
 
Overall design single cell gene expression and Bcell receptor sequences of meningeal ectopic lymphoid tissue and CSF in 3 anti-CD20 and 3 vehicle treated Thx2D2 mice
 
Contributor(s) Lepennetier G, Lehmann-Horn K, Diddens J, Georgieva T, Verena F
Citation(s) 38933267
Submission date Aug 05, 2021
Last update date Jul 31, 2024
Contact name Gildas Lepennetier
E-mail(s) gildas.lepennetier@tum.de
Organization name Klinikum Rechts der Isar
Department Neurology
Street address Ismaninger Straße 22
City Munich
ZIP/Postal code 81675
Country Germany
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (18)
GSM5503739 MUC26014
GSM5503740 MUC26020
GSM5503741 MUC26026
Relations
BioProject PRJNA752282
SRA SRP331195

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE181506_Feature_mouse_10x.csv.gz 342 b (ftp)(http) CSV
GSE181506_RAW.tar 75.6 Mb (http)(custom) TAR (of CSV, MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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