|
| Status |
Public on Oct 05, 2021 |
| Title |
Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster [ChIPmentation] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ChIPmentation-seq analysis of CTCF and RAD21 in wildtype and mutant CTCF binding sites alleles
|
| |
|
| Overall design |
ChIPmentation-seq analysis of CTCF and RAD21 in wildtype and mutant CTCF binding sites alleles
|
| |
|
| Contributor(s) |
Amândio AR, Beccari L, Lopez-Delisle L, Mascrez B, Zakany J, Gitto S, Duboule D |
| Citation(s) |
34711654 |
| |
| Submission date |
Aug 03, 2021 |
| Last update date |
Nov 18, 2021 |
| Contact name |
Lucille Lopez-Delisle |
| E-mail(s) |
lucille.delisle@epfl.ch
|
| Organization name |
EPFL
|
| Street address |
Station 19
|
| City |
Lausanne |
| ZIP/Postal code |
1015 |
| Country |
Switzerland |
| |
|
| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (30)
|
|
| This SubSeries is part of SuperSeries: |
| GSE181387 |
Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster |
|
| Relations |
| BioProject |
PRJNA751990 |
| SRA |
SRP331018 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE181384_E10.5_trunk_DelCBS1-2_ChIPM_RAD21_MAnorm_neq2.bw |
1.2 Gb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-2_ChIPM_RAD21_neq2.bw |
967.6 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-3_ChIPM_CTCF_MAnorm_neq2.bw |
1.0 Gb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-3_ChIPM_CTCF_neq2.bw |
791.4 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-3_ChIPM_RAD21_MAnorm_neq2.bw |
957.4 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-3_ChIPM_RAD21_neq2.bw |
630.4 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-4_ChIPM_CTCF_MAnorm_neq2.bw |
929.4 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-4_ChIPM_CTCF_neq2.bw |
667.2 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-4_ChIPM_RAD21_MAnorm_neq2.bw |
963.0 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-4_ChIPM_RAD21_neq2.bw |
639.1 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-5_ChIPM_CTCF_MAnorm_neq2.bw |
1.1 Gb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-5_ChIPM_CTCF_neq2.bw |
863.9 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-5_ChIPM_RAD21_MAnorm_neq2.bw |
594.9 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1-5_ChIPM_RAD21_neq2.bw |
302.1 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1_ChIPM_CTCF_MAnorm_neq3.bw |
1008.4 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1_ChIPM_CTCF_neq3.bw |
737.8 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1_ChIPM_RAD21_MAnorm_neq3.bw |
881.2 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_DelCBS1_ChIPM_RAD21_neq3.bw |
566.5 Mb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_WT_ChIPM_CTCF_MAnorm_neq3.bw |
1.1 Gb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_WT_ChIPM_CTCF_neq3.bw |
1.1 Gb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_WT_ChIPM_RAD21_MAnorm_neq4.bw |
1.4 Gb |
(ftp)(http) |
BW |
| GSE181384_E10.5_trunk_WT_ChIPM_RAD21_neq4.bw |
1.5 Gb |
(ftp)(http) |
BW |
| GSE181384_RAW.tar |
23.3 Gb |
(http)(custom) |
TAR (of BW, NARROWPEAK) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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