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Series GSE18126

Query DataSets for GSE18126

Status

Public on May 05, 2010

Title

Methylation status in AG- and PG-derived cells and sperm

Organism

Mus musculus

Experiment type

Methylation profiling by genome tiling array

Summary

Genomic imprinting describes the expression of a subset of mammalian genes from one parental chromosome. The parent-of-origin specific expression of imprinted genes relies on DNA methylation of CpG-dinucleotides at differentially methylated regions (DMRs) during gametogenesis. We identified the paternally methylated DMRs at mouse chromosome 1 near the imprinted Zdbf2 gene using a methylated-DNA immunoprecipitation-on-chip (meDIP-on-chip) method applied to DNA from parthenogenetic (PG)- and androgenetic (AG)-derived cells and sperm.

Overall design

To identify novel DMRs, genome-wide methylation analysis of three samples were performed using MeDIP and whole genome tiling array.

Contributor(s)

Hiura H, Sugawara A, Ogawa H, John RM, Miyauchi N, Miyanari Y, Horiike T, Li Y, Yaegashi N, Sasaki H, Kono T, Arima T

Citation(s)

20385583

Submission date

Sep 16, 2009

Last update date

Mar 22, 2012

Contact name

Hitoshi Hiura

E-mail(s)

h_hiura@med.tohoku.ac.jp

Phone

+81 22 717 7844

Organization name

Tohoku University Graduate School of Medicine

Department

Obstetrics and Gynecology

Street address

2-1 Seiryo-cho, Aoba-ku

City

Sendai

ZIP/Postal code

980-8575

Country

Japan

Platforms (25)

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GPL9585	Agilent-015310 Mouse Whole Genome ChIP-on-Chip Set 244K - 1 of 25 (Probe Name version)
GPL9586	Agilent-015311 Mouse Whole Genome ChIP-on-Chip Set 244K - 2 of 25 (Probe Name version)
GPL9587	Agilent-015312 Mouse Whole Genome ChIP-on-Chip Set 244K - 3 of 25 (Probe Name version)

GPL9588	Agilent-015313 Mouse Whole Genome ChIP-on-Chip Set 244K - 4 of 25 (Probe Name version)
GPL9589	Agilent-015317 Mouse Whole Genome ChIP-on-Chip Set 244K - 5 of 25 (Probe Name version)
GPL9590	Agilent-015319 Mouse Whole Genome ChIP-on-Chip Set 244K - 6 of 25 (Probe Name version)
GPL9591	Agilent-015320 Mouse Whole Genome ChIP-on-Chip Set 244K - 7 of 25 (Probe Name version)
GPL9592	Agilent-015321 Mouse Whole Genome ChIP-on-Chip Set 244K - 8 of 25 (Probe Name version)
GPL9593	Agilent-015323 Mouse Whole Genome ChIP-on-Chip Set 244K - 9 of 25 (Probe Name version)
GPL9594	Agilent-015325 Mouse Whole Genome ChIP-on-Chip Set 244K - 10 of 25 (Probe Name version)
GPL9595	Agilent-015327 Mouse Whole Genome ChIP-on-Chip Set 244K - 11 of 25 (Probe Name version)
GPL9596	Agilent-015328 Mouse Whole Genome ChIP-on-Chip Set 244K - 12 of 25 (Probe Name version)
GPL9597	Agilent-015329 Mouse Whole Genome ChIP-on-Chip Set 244K - 13 of 25 (Probe Name version)
GPL9598	Agilent-015330 Mouse Whole Genome ChIP-on-Chip Set 244K - 14 of 25 (Probe Name version)
GPL9599	Agilent-015332 Mouse Whole Genome ChIP-on-Chip Set 244K - 15 of 25 (Probe Name version)
GPL9600	Agilent-015333 Mouse Whole Genome ChIP-on-Chip Set 244K - 16 of 25 (Probe Name version)
GPL9601	Agilent-015334 Mouse Whole Genome ChIP-on-Chip Set 244K - 17 of 25 (Probe Name version)
GPL9602	Agilent-015335 Mouse Whole Genome ChIP-on-Chip Set 244K - 18 of 25 (Probe Name version)
GPL9603	Agilent-015336 Mouse Whole Genome ChIP-on-Chip Set 244K - 19 of 25 (Probe Name version)
GPL9604	Agilent-015337 Mouse Whole Genome ChIP-on-Chip Set 244K - 20 of 25 (Probe Name version)
GPL9605	Agilent-015339 Mouse Whole Genome ChIP-on-Chip Set 244K - 21 of 25 (Probe Name version)
GPL9606	Agilent-015340 Mouse Whole Genome ChIP-on-Chip Set 244K - 22 of 25 (Probe Name version)
GPL9607	Agilent-015341 Mouse Whole Genome ChIP-on-Chip Set 244K - 23 of 25 (Probe Name version)
GPL9608	Agilent-015343 Mouse Whole Genome ChIP-on-Chip Set 244K - 24 of 25 (Probe Name version)
GPL9609	Agilent-015344 Mouse Whole Genome ChIP-on-Chip Set 244K - 25 of 25 (Probe Name version)

Samples (75)

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GSM453343	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453344	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453345	Mouse sperm_MeDIP-chip

GSM453653	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453654	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453655	Mouse sperm_MeDIP-chip
GSM453656	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453657	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453658	Mouse sperm_MeDIP-chip
GSM453661	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453663	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453666	Mouse sperm_MeDIP-chip
GSM453720	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453727	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453734	Mouse sperm_MeDIP-chip
GSM453755	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453756	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453773	Mouse sperm_MeDIP-chip
GSM453831	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453832	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453834	Mouse sperm_MeDIP-chip
GSM453919	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453920	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453921	Mouse sperm_MeDIP-chip
GSM453922	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453923	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453924	Mouse sperm_MeDIP-chip
GSM453925	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453926	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453927	Mouse sperm_MeDIP-chip
GSM453928	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453929	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453930	Mouse sperm_MeDIP-chip
GSM453931	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453932	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453933	Mouse sperm_MeDIP-chip
GSM453934	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453935	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453936	Mouse sperm_MeDIP-chip
GSM453937	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453938	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453939	Mouse sperm_MeDIP-chip
GSM453940	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453941	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453942	Mouse sperm_MeDIP-chip
GSM453951	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453952	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453953	Mouse sperm_MeDIP-chip
GSM453992	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM453996	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM453999	Mouse sperm_MeDIP-chip
GSM454005	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM454278	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM454298	Mouse sperm_MeDIP-chip
GSM454299	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM454300	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM454302	Mouse sperm_MeDIP-chip
GSM454468	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM454469	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM454470	Mouse sperm_MeDIP-chip
GSM454471	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM454472	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM454473	Mouse sperm_MeDIP-chip
GSM454477	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM454480	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM454481	Mouse sperm_MeDIP-chip
GSM454482	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM454483	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM454484	Mouse sperm_MeDIP-chip
GSM454485	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM454486	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM454487	Mouse sperm_MeDIP-chip
GSM454488	Mouse androgenetic (AG)-derived cells_MeDIP-chip
GSM454489	Mouse parthenogenetic (PG)-derived cells_MeDIP-chip
GSM454490	Mouse sperm_MeDIP-chip

This SubSeries is part of SuperSeries:

GSE21662

A tripartite paternally methylated region within the Gpr1-Zdbf2 imprinted domain on mouse chromosome 1 identified by meDIP-on-chip

Relations

BioProject

PRJNA129043

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE18126_RAW.tar	4.5 Gb	(http)(custom)	TAR (of TXT)
Processed data included within Sample table