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Series GSE180672 Query DataSets for GSE180672
Status Public on Jan 18, 2024
Title Progranulin–glucocerebrosidase complex regulates tau and alpha-synuclein inclusions to alter phenotypes in tauopathy
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Many neurodegenerative disorders including Alzheimer’s disease (AD) and frontotemporal lobar degeneration (FTLD) are characterized by abnormal protein deposition and frequently show comorbid pathology. Progranulin (PGRN) is implicated not only in TDP-43 but in tau and alpha-synuclein proteinopathies. However, the underlying mechanisms are unknown. Here, we generated P301S tau transgenic mice with PGRN haploinsufficiency and loss and found that those mice exhibit exacerbated disinhibition phenotype while showing attenuated memory impairment, hippocampal atrophy, and transcriptomic changes. Remarkably, the phenotypic alteration was accompanied by an increase in tau inclusions, which are positive for alpha-synuclein, a PGRN binding partner beta-glucocerebrosidase (GCase), and its substrate glucosylceramide. GCase inhibition or PGRN deficiency enhanced tau aggregation induced by AD-derived tau seeds in neurons. In vitro, GCase and glucosylceramide promoted P301S tau aggregation. Similar co-pathology was observed in AD and FTLD-GRN patients.
 
Overall design 18 samples (hippocampus) from 6 genotypes with 3 biological replicates were individually processed and sequenced. Nuclei were isolated from hippocampi using Nuclei EZ Prep Kit (SIGMA #NUC-101). Libraries were prepared using Chromium Single Cell 3” Reagent Kits v3 (10X Genomics) . The libraries underwent HiSeq paired-end sequencing with a sequence depth of 200 million reads per sample using NovaSeq instrument (Ilumina).
 
Contributor(s) Takahashi H, Bhagwagar S, Nies SH, Chiasseu MT, Wang G, Mackenzie I, Strittmatter SM
Citation(s) 38365772
Submission date Jul 22, 2021
Last update date Mar 07, 2024
Contact name Hideyuki Takahashi
Organization name Yale University
Department Neuroscience
Lab Strittmatter
Street address 295 Congress Ave. BCMM431
City New Haven
State/province Connecticut
ZIP/Postal code 06536-0812
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (18)
GSM5467467 WT_1 hippomcampal nuclei
GSM5467468 WT_2 hippomcampal nuclei
GSM5467469 WT_3 hippomcampal nuclei
Relations
BioProject PRJNA749056
SRA SRP329514

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Supplementary file Size Download File type/resource
GSE180672_RAW.tar 516.0 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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